CX299875

Overview
NameCX299875
Unique NameCX299875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10061 contig Ccv1_Contig10061:197..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H33_VITVI (Histone H3.3 OS=Vitis vinifera PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 1.346e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   41 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H33_TOBAC (Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.346e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   41 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H33_PINPS (Histone H3.3 OS=Pinus pinaster PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 1.346e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   41 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H33_ORYSJ (Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3 PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 1.346e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   41 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H33_ORYSI (Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_011536 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.346e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   41 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H33_ORYCO (Histone H3.3 OS=Oryza coarctata PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 1.346e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   41 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H33_MEDSA (Histone H3.3 OS=Medicago sativa PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 1.346e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   41 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H33_LOLTE (Histone H3.3 OS=Lolium temulentum PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 1.346e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   41 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H33_LOLMU (Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 1.346e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   41 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H33_GOSHI (Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 1.346e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   41 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of CX299875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
H33_VITVI1.346e-47100.00Histone H3.3 OS=Vitis vinifera PE=2 SV=3[more]
H33_TOBAC1.346e-47100.00Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1[more]
H33_PINPS1.346e-47100.00Histone H3.3 OS=Pinus pinaster PE=2 SV=3[more]
H33_ORYSJ1.346e-47100.00Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3... [more]
H33_ORYSI1.346e-47100.00Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H33_ORYCO1.346e-47100.00Histone H3.3 OS=Oryza coarctata PE=2 SV=3[more]
H33_MEDSA1.346e-47100.00Histone H3.3 OS=Medicago sativa PE=1 SV=2[more]
H33_LOLTE1.346e-47100.00Histone H3.3 OS=Lolium temulentum PE=2 SV=2[more]
H33_LOLMU1.346e-47100.00Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=... [more]
H33_GOSHI1.346e-47100.00Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC07003E03SK NTLeaf1 Citrus clementina cDNA clone C07003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299875 ID=CX299875; Name=CX299875; organism=Citrus clementina; type=EST; length=469bp
ATCGTTACCGTCCAGGAACTGTCGCCCTACGTGAAATCCGCAAATATCAA
AAGAGCACTGAGCTTTTGATCCGCAAGCTGCCTTTCCAGCGGCTGGTTCG
TGAAATTGCTCAAGATTTCAAGACAGATTTGAGGTTCCAAAGCCACGCGG
TTCTTGCGCTGCAGGAAGCGGCAGAGGCTTATCTCGTGGGTCTGTTCGAG
GACACCAACCTTTGTGCTATCCATGCCAAGCGAGTCACCATTATGCCCAA
GGATATTCAACTGGCAAGGCGAATCCGAGGCGAGCGTGCTTAATTTGTGA
TTCCTTAGGTAGTCGTCAGTTTCCTATTTAGTTTGCTAGTTTTTCTTTAT
TTCGGTTTTTACATGTAAAGAATGATATGATGGATTGAAGAATATTTGGC
ATTTGATATTTGCTAGATAAATGTTTATTGTGGAGCTTATCTTGTTTCAC
TTTACCTTCAAAAAAAAAA
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