CX300032

Overview
NameCX300032
Unique NameCX300032
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300032 vs. ExPASy Swiss-Prot
Match: U424_DICDI (UPF0424 protein OS=Dictyostelium discoideum GN=DDB_G0277951 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.198e-32
Identity = 64/154 (41.56%), Postives = 100/154 (64.94%), Query Frame = 1
Query:    1 DCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKG 462
            D   ++SL +++D   ++ LNE V GSV+ +FK+WE R +   +H   +  D EL++ IPF    +IKSI I+GG  G+SP+KM+ +IN   IDF +       QEW+L E+ +G + Y T+ +KF ++ ++TL+FP NFG  TT+I++I LKG
Sbjct:   15 DDGIEYSLNRYLDTGTITCLNEKVKGSVRHIFKSWEDRHDL--KHFVESCDDEELIINIPFGAVTQIKSIIIIGGDGGSSPNKMKAYINNSNIDFGNINSFACTQEWNLHEDFEGQIGYSTKPTKFNNINHLTLYFPSNFGSPTTKIYFIALKG 166          
BLAST of CX300032 vs. ExPASy Swiss-Prot
Match: U424_DROPS (UPF0424 protein GA19395 OS=Drosophila pseudoobscura pseudoobscura GN=GA19395 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.183e-28
Identity = 65/151 (43.05%), Postives = 96/151 (63.58%), Query Frame = 1
Query:   13 DWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGE 465
            ++SLY  ID   +  LNE   GS K+VFK +E R + S      +D D ELL  IPFT ++K+K I I G  D + P+K+++F NR  + F DA+ ++  QE++L  + +G +EY  +   F SV ++TL+FP NFG D T+I+YIGL+GE
Sbjct:   28 EYSLYTKIDAENLECLNEETEGSGKTVFKPYESRQDMS--KFVQSDADEELLFNIPFTGNIKLKGIIICGANDDSHPNKVKIFKNRPKMTFDDAK-VKVDQEFELTRDPRGEIEYSPKVVNFSSVHHLTLYFPSNFGDDKTRIYYIGLRGE 175          
BLAST of CX300032 vs. ExPASy Swiss-Prot
Match: U424_DROME (UPF0424 protein CG6153 OS=Drosophila melanogaster GN=CG6153 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.210e-27
Identity = 67/151 (44.37%), Postives = 98/151 (64.90%), Query Frame = 1
Query:   13 DWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGE 465
            ++SLY  IDL  V  LNE   G  KSVFK +E+R + S +++ES D D ELL  IPFT ++K+K I I G  D + P+ +++F NR  + F DA+  +  QE+ L  + +G +EY  +   F SV +++L+FP NFG D T+I+YIGL+GE
Sbjct:   28 EYSLYTKIDLDNVECLNEETDGQGKSVFKPYEKRQDLS-KYVES-DADEELLFNIPFTGNIKLKGIIISGANDDSHPNMVKIFKNRPRMTFDDAR-AKPDQEFQLTRDARGEIEYSPKVVTFSSVHHLSLYFPSNFGEDITRIYYIGLRGE 175          
BLAST of CX300032 vs. ExPASy Swiss-Prot
Match: CA128_HUMAN (UPF0424 protein C1orf128 OS=Homo sapiens GN=C1orf128 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.063e-27
Identity = 66/150 (44.00%), Postives = 97/150 (64.67%), Query Frame = 1
Query:   16 WSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGE 465
            + LY  IDL ++  LNE+  GS + VFK WE+R + S + +ES D D ELL  IPFT +VK+K I I+G  D + PS+MR++ N   + F D +  +  Q + L  +L G LEY T+ S+F +V ++++H   NFG DTT++ YIGL+GE
Sbjct:   29 YGLYLRIDLERLQCLNESREGSGRGVFKPWEERTDRS-KFVES-DADEELLFNIPFTGNVKLKGIIIMGEDDDSHPSEMRLYKNIPQMSFDDTE-REPDQTFSLNRDLTGELEYATKISRFSNVYHLSIHISKNFGADTTKVFYIGLRGE 175          
BLAST of CX300032 vs. ExPASy Swiss-Prot
Match: YOJ9_CAEEL (UPF0424 protein ZK353.9 OS=Caenorhabditis elegans GN=ZK353.9 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.519e-27
Identity = 65/150 (43.33%), Postives = 102/150 (68.00%), Query Frame = 1
Query:   16 WSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGE 465
            + +  +ID+ KV+ LNE+V G+ K VFK  E+R +   E++ES D D ELL  IPFT  V++  +SI+G  DG+ P+K+R+F +RE + F D   ++A QE DL ++ QG+++Y  + SKF ++ N+++    NFG D T+I+YIGL+GE
Sbjct:   26 YDMVSYIDMEKVTTLNESVDGAGKKVFKVMEKR-DDRLEYVES-DCDHELLFNIPFTGHVRLTGLSIIGDEDGSHPAKIRLFKDREAMSFDDCS-IEADQEIDLKQDPQGLVDYPLKASKFGNIHNLSILVDANFGEDETKIYYIGLRGE 172          
BLAST of CX300032 vs. ExPASy Swiss-Prot
Match: CA128_MOUSE (UPF0424 protein C1orf128 homolog OS=Mus musculus GN=Trp26 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.519e-27
Identity = 65/150 (43.33%), Postives = 97/150 (64.67%), Query Frame = 1
Query:   16 WSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGE 465
            + LY  IDL ++  LNE+  GS + VFK WE+R + S + +ES D D ELL  IPFT +VK+K + I+G  D + PS+MR++ N   + F D +  +  Q + L  ++ G LEY T+ S+F +V ++++H   NFG DTT+I YIGL+GE
Sbjct:   29 YGLYLRIDLERLQCLNESREGSGRGVFKPWEERTDRS-KFVES-DADEELLFNIPFTGNVKLKGVIIMGEDDDSHPSEMRLYKNIPQMSFDDTE-REPEQTFSLNRDITGELEYATKISRFSNVYHLSIHISKNFGADTTKIFYIGLRGE 175          
BLAST of CX300032 vs. ExPASy Swiss-Prot
Match: CA128_XENLA (UPF0424 protein C1orf128 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.003e-27
Identity = 63/151 (41.72%), Postives = 100/151 (66.23%), Query Frame = 1
Query:   13 DWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGE 465
            ++ L++ IDL K+  LNE+  GS +SVF+AWE+R N     +ES+D D ELL  IPFT +VK+K I ++G    T P+++R+F N   + F D    +A Q + L  ++ G LEY T+ ++F +V+++++H   NFG + T+I+YIGL+GE
Sbjct:   26 EYGLFRKIDLDKLQCLNESREGSGRSVFRAWEER-NDRTRFVESDD-DEELLFNIPFTGNVKLKGIVLIGEDSDTHPAELRLFKNVPHMSFDDT-GREADQTFSLNIDVNGNLEYPTKIARFSNVSHLSIHISKNFGAENTKIYYIGLRGE 173          
BLAST of CX300032 vs. ExPASy Swiss-Prot
Match: CA128_DANRE (UPF0424 protein C1orf128 homolog OS=Danio rerio GN=zgc:77241 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.060e-23
Identity = 59/151 (39.07%), Postives = 95/151 (62.91%), Query Frame = 1
Query:   13 DWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGE 465
            ++ LY+ ID+ K+  LNE+  G  K VFK W+QR + + + +ES D D ELL  IPFT  VK+K I I G  D + P+++R+F N   + F D    +  Q + L  + +  LEY T+ ++F +V ++++H   NFG ++T+++YIGL+GE
Sbjct:   27 EYELYRRIDIEKLQCLNESRDGDGKLVFKPWDQRTDRN-KFVES-DADEELLFNIPFTGSVKLKGIIISGEDDESHPAEIRLFKNIPQMSFDDTS-REPEQAFRLNRDPRAELEYPTKIARFSNVEHLSIHVSRNFGAESTRVYYIGLRGE 174          
BLAST of CX300032 vs. ExPASy Swiss-Prot
Match: YN82_SCHPO (UPF0424 protein P35G2.02 OS=Schizosaccharomyces pombe GN=SPBP35G2.02 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.767e-16
Identity = 50/151 (33.11%), Postives = 80/151 (52.98%), Query Frame = 1
Query:   19 SLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQG--VLEYQTRYSKFQSVANITLHFPDNFGG-DTTQIHYIGLKG 462
            +LY  I    +  LNEAVP S K VFK W+ R + +   +  +D D +LL  +PF     +KSI +    + T+P    +F NR  +DF    D+QA + ++     +G  + E+  +   +Q++ N+ + F  + G  D TQI YIGL+G
Sbjct:   23 TLYSCIRKESIVTLNEAVPDSGKLVFKPWDLRYDDTD--IVESDADDQLLFQVPFAGAATLKSILVRIFPNETAPHSFSLFPNRTDLDFDTIGDVQATETFEFPLTFEGSHIFEFPVKTRLYQNLQNLNIFFTKSDGSDDPTQIAYIGLRG 171          
The following BLAST results are available for this feature:
BLAST of CX300032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
U424_DICDI6.198e-3241.56UPF0424 protein OS=Dictyostelium discoideum GN=DDB... [more]
U424_DROPS3.183e-2843.05UPF0424 protein GA19395 OS=Drosophila pseudoobscur... [more]
U424_DROME1.210e-2744.37UPF0424 protein CG6153 OS=Drosophila melanogaster ... [more]
CA128_HUMAN2.063e-2744.00UPF0424 protein C1orf128 OS=Homo sapiens GN=C1orf1... [more]
YOJ9_CAEEL3.519e-2743.33UPF0424 protein ZK353.9 OS=Caenorhabditis elegans ... [more]
CA128_MOUSE3.519e-2743.33UPF0424 protein C1orf128 homolog OS=Mus musculus G... [more]
CA128_XENLA6.003e-2741.72UPF0424 protein C1orf128 homolog OS=Xenopus laevis... [more]
CA128_DANRE1.060e-2339.07UPF0424 protein C1orf128 homolog OS=Danio rerio GN... [more]
YN82_SCHPO4.767e-1633.11UPF0424 protein P35G2.02 OS=Schizosaccharomyces po... [more]
back to top
Properties
Property NameValue
Genbank descriptionC07005C08SK SaltLeaf1 Citrus clementina cDNA clone C07005C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300032 ID=CX300032; Name=CX300032; organism=Citrus clementina; type=EST; length=469bp
GATTGCTCTTCTGATTGGTCTCTCTACAAACATATAGATCTTTCCAAGGT
GTCTGCATTAAATGAGGCTGTTCCAGGGAGTGTCAAGTCAGTTTTCAAAG
CATGGGAGCAGCGTCTGAATTCTTCTGGGGAACATTTGGAAAGCAATGAT
GGTGATCCAGAGTTACTTGTTTATATTCCATTTACTACAGATGTTAAGAT
CAAGAGCATTTCAATTGTTGGTGGTGCTGATGGAACAAGTCCTTCGAAGA
TGAGAGTGTTCATCAATCGAGAGGGTATTGACTTCTCAGATGCTCAAGAT
ATGCAAGCTATTCAGGAATGGGATTTGGTTGAGAATTTGCAAGGAGTGTT
AGAATACCAAACAAGGTATTCCAAATTTCAAAGTGTGGCCAATATCACAT
TACACTTCCCTGACAATTTTGGTGGTGACACAACTCAAATACACTACATT
GGCCTAAAAGGGGAAGCCA
back to top