CX300039

Overview
NameCX300039
Unique NameCX300039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length399
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3589 contig Ccv1_Contig3589:361..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.424e-54
Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            KHAMEIIHLLTDQNPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARE+AFRNIK+IAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:   87 KHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 197          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 4.144e-54
Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            KHAMEIIHLLTD NPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV+QAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:   44 KHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVSQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 154          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 4.582e-53
Identity = 104/111 (93.69%), Postives = 110/111 (99.10%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            KHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:   97 KHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 7.815e-53
Identity = 103/111 (92.79%), Postives = 110/111 (99.10%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            KHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:   97 KHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 192.2 bits (487), Expect = 6.846e-49
Identity = 95/111 (85.59%), Postives = 106/111 (95.50%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            KHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   94 KHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 6.846e-49
Identity = 95/111 (85.59%), Postives = 106/111 (95.50%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            KHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   94 KHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 2.602e-48
Identity = 94/111 (84.68%), Postives = 105/111 (94.59%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            KHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELINA KGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   94 KHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 2.602e-48
Identity = 92/110 (83.64%), Postives = 105/110 (95.45%), Query Frame = 2
Query:    5 HAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            HA EIIHL+TDQNPIQ+ VDA++N GPRED+TRIGSAG VRRQAVD+SPLRRVNQAI LLTTGARE++FRN+K+IAECLA+ELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:  104 HAFEIIHLMTDQNPIQIAVDAIVNCGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAIALLTTGAREASFRNVKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 213          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 2.602e-48
Identity = 94/111 (84.68%), Postives = 105/111 (94.59%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            KHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIK IAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   94 KHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.602e-48
Identity = 93/111 (83.78%), Postives = 105/111 (94.59%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            KH+ EIIHLLT +NP+Q++V A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:  118 KHSFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 228          
The following BLAST results are available for this feature:
BLAST of CX300039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS5_CICAR1.424e-5497.3040S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS5_NICPL4.144e-5498.2040S ribosomal protein S5 (Fragment) OS=Nicotiana p... [more]
RS51_ARATH4.582e-5393.6940S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS52_ARATH7.815e-5392.7940S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS5_HUMAN6.846e-4985.5940S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN6.846e-4985.5940S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5_RAT2.602e-4884.6840S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5_NEUCR2.602e-4883.6440S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]
RS5_MOUSE2.602e-4884.6840S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5A_DROME2.602e-4883.7840S ribosomal protein S5a OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionC07005D05SK SaltLeaf1 Citrus clementina cDNA clone C07005D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300039 ID=CX300039; Name=CX300039; organism=Citrus clementina; type=EST; length=399bp
TAAGCATGCCATGGAGATCATTCACCTTTTGACTGACCAGAACCCAATTC
AAGTCATTGTTGACGCTGTCATCAACAGTGGTCCAAGGGAAGATGCTACC
CGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATATTTCCCC
ATTGCGCCGTGTGAATCAAGCGATCTATCTACTCACCACTGGTGCTCGTG
AATCTGCTTTTCGTAACATCAAGACTATTGCCGAATGCTTGGCCGATGAA
CTCATTAATGCTGCCAAGGGTTCATCTAACAGCTATGCGATCAAGAAGAA
GGATGAGATTGAGAGAGTGGCAAAGGCCAATCGCTGAGGACGTGATAGTG
GAGAAGCAGATGCAGAAAGTTGTACTTTTAAAAAAAAAAAAAACTTTTG
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