CX300040

Overview
NameCX300040
Unique NameCX300040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX300040 vs. ExPASy Swiss-Prot
Match: TRM1_ARATH (Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 1 OS=Arabidopsis thaliana GN=At5g15810 PE=2 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 6.196e-26
Identity = 58/81 (71.60%), Postives = 67/81 (82.72%), Query Frame = 1 
Query:    1 GSVILAKEPTLQANFARAVASLNKAQAKKVARFLPNPEKHWGPKPRAGRQITSKHISLLGAEAVNGHLSLEDGEEPDAKRQ 243
            GSVIL+KEP+ QA+F+R V SL+KAQAKKVARFLPNPEKHWGPK RAGR ITSKH+SLLG EAVNGHL+    E  D + +
Sbjct:  483 GSVILSKEPSHQADFSRHVGSLSKAQAKKVARFLPNPEKHWGPKIRAGRTITSKHVSLLGHEAVNGHLNNNHKEAGDEEEE 563
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BLAST of CX300040 vs. ExPASy Swiss-Prot
Match: TRM2_ARATH (Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 2 OS=Arabidopsis thaliana GN=At3g02320 PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 2.355e-25
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 GSVILAKEPTLQANFARAVASLNKAQAKKVARFLPNPEKHWGPKPRAGRQITSKHISLLGAEAVNGHLS 207
            GSVIL+KEP+ + +F+R + SL+KAQAKKVARFLPNPEKHWGPK RAGRQITSKH+SL+G EAVNGHLS
Sbjct:  483 GSVILSKEPSHEVDFSRHIGSLSKAQAKKVARFLPNPEKHWGPKLRAGRQITSKHVSLIGHEAVNGHLS 551
The following BLAST results are available for this feature:
BLAST of CX300040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRM1_ARATH6.196e-2671.60Probable N(2),N(2)-dimethylguanosine tRNA methyltr... [more]
TRM2_ARATH2.355e-2578.26Probable N(2),N(2)-dimethylguanosine tRNA methyltr... [more]
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Properties
Property NameValue
Genbank descriptionC07005D06SK SaltLeaf1 Citrus clementina cDNA clone C07005D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300040 ID=CX300040; Name=CX300040; organism=Citrus clementina; type=EST; length=567bp
GGAAGTGTAATACTAGCAAAGGAACCAACTCTTCAAGCCAATTTTGCACG
AGCTGTTGCGTCTCTCAACAAGGCACAAGCCAAGAAGGTTGCTCGCTTCC
TTCCGAATCCTGAAAAGCACTGGGGTCCTAAACCCAGAGCTGGTCGTCAA
ATCACAAGCAAACACATCTCTCTTCTAGGTGCAGAGGCTGTTAATGGACA
TCTTAGCCTTGAAGATGGTGAAGAGCCTGATGCCAAGCGTCAGAAGACCG
AGGACACCACTCANAAGACTGAGGATGCCACCCCAAGTTCATGAAATAAA
TATCTTTCTCAATATTTTTTTTCTCTATTTTTTTCACTCCACCTTAGCTG
CTCCACAGCTCGCTTTAGTCTCCAGTCTCCCACGTGTATTTGAAAATTTT
GTCTAATTCTTTATTGAGGAGGAGAAGAGCCGGTATCCAACAGTTTGGAG
GGTGCCATCTTAAAATAACCTTGCAGAAATCAGAACGCTATTCTGAAGTC
AAGCAACTCCGTCTAGAGGCAAATTTTGGTAGTTTTGAGCTTTTGAATGT
TTATTGTAAGATGCTAT
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