CX300053

Overview
NameCX300053
Unique NameCX300053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300053 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.593e-41
Identity = 81/98 (82.65%), Postives = 89/98 (90.82%), Query Frame = 2
Query:    5 EKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVTRRQEYERLQRRFDWGEDSVYNQEAIELSGGR 298
            EKRL AIVD+NL+  Y  +EVE MIQVALLCTQ SPEDRP MSEVVRMLEGEGLAERWEEWQ+VEVTRR E+ERLQRRFDWGEDS++NQ+AIELSGGR
Sbjct:  516 EKRLGAIVDKNLDGEYIKEEVEMMIQVALLCTQGSPEDRPVMSEVVRMLEGEGLAERWEEWQNVEVTRRHEFERLQRRFDWGEDSMHNQDAIELSGGR 613          
BLAST of CX300053 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 6.157e-25
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = 2
Query:    5 EKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVTRRQEYERLQRRFDWGEDSVYNQEAIELSGGR 298
            EK+L+ +VD +L  NY  +E+E +IQVALLCTQ SP +RP MSEVVRMLEG+GLAE+W+EWQ VE+ R +         DW  DS YN  A+ELSG R
Sbjct:  528 EKKLEMLVDPDLQTNYEERELEQVIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWDEWQKVEILREEIDLSPNPNSDWILDSTYNLHAVELSGPR 625          
BLAST of CX300053 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.791e-24
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 2
Query:    5 EKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVTRRQEYERLQRRFDWGEDSVYNQEAIELSGGR 298
            EK+L+ +VD +L  NY   EVE +IQVALLCTQ+SP +RP MSEVVRMLEG+GLAE+W+EWQ VEV R++         DW  DS  N  A+ELSG R
Sbjct:  531 EKKLEMLVDPDLQSNYTEAEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAEKWDEWQKVEVLRQEVELSSHPTSDWILDSTDNLHAMELSGPR 628          
BLAST of CX300053 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.569e-20
Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 2
Query:    5 EKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVTRR 211
            EK+L+A+VD +L  NY  +EVE +IQVALLCTQ+SP +RP MSEVVRMLEG+GLAERWEEWQ  E+ R+
Sbjct:  515 EKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAERWEEWQKEEMFRQ 583          
BLAST of CX300053 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.618e-17
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 2
Query:    5 EKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEV 202
            EK+L+++VD  L   Y   EVE +IQ+ALLCTQ+S  +RP MSEVVRMLEG+GLAERWEEWQ  E+
Sbjct:  501 EKKLESLVDAELEGKYVETEVEQLIQMALLCTQSSAMERPKMSEVVRMLEGDGLAERWEEWQKEEM 566          
BLAST of CX300053 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.618e-17
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 2
Query:    5 EKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEV 202
            EK+L+++VD  L   Y   EVE +IQ+ALLCTQ+S  +RP MSEVVRMLEG+GLAERWEEWQ  E+
Sbjct:  520 EKKLESLVDAELEGKYVETEVEQLIQMALLCTQSSAMERPKMSEVVRMLEGDGLAERWEEWQKEEM 585          
BLAST of CX300053 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.054e-12
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 2
Query:    5 EKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERW 178
            E +++ +VDR L   Y+  EV  M+QVALLCTQ  P  RP MSEVV+MLEG+GLAERW
Sbjct:  520 EMKVEELVDRELGTTYDRIEVGEMLQVALLCTQFLPAHRPKMSEVVQMLEGDGLAERW 577          
The following BLAST results are available for this feature:
BLAST of CX300053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
Y5129_ARATH3.593e-4182.65Probable LRR receptor-like serine/threonine-protei... [more]
SERK1_ARATH6.157e-2557.14Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
SERK2_ARATH1.791e-2458.16Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
BAK1_ARATH1.569e-2068.12BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
SERK5_ARATH3.618e-1763.64Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
SERK4_ARATH3.618e-1763.64Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
Y2239_ARATH2.054e-1260.34Probable LRR receptor-like serine/threonine-protei... [more]
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Properties
Property NameValue
Genbank descriptionC07005E07SK SaltLeaf1 Citrus clementina cDNA clone C07005E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300053 ID=CX300053; Name=CX300053; organism=Citrus clementina; type=EST; length=546bp
ATTTGAGAAAAGGTTGGATGCTATTGTAGATCGCAACCTTAATAAGAATT
ACAACATCCAAGAGGTGGAGACAATGATTCAAGTTGCACTGCTCTGCACA
CAAGCATCACCAGAGGACCGTCCAGCAATGTCAGAGGTGGTGCGGATGTT
GGAAGGAGAGGGTCTAGCTGAGAGGTGGGAAGAGTGGCAGCATGTGGAAG
TTACTCGTAGGCAAGAGTACGAGAGGCTGCAGAGAAGGTTTGACTGGGGG
GAAGATTCTGTATACAACCAGGAAGCAATTGAATTATCTGGTGGAAGATG
AGGTAACTATTTGGTTACATCATACTAGGTTAGCTTGATGTTTATCTTTC
AGTTAACAAGCCTCGATATTTTTGTATATGATATGTTGTTTGTACCGGTT
ATTGTATTTAAATTTTGGTGGTTGAGCATTCTTAAGCAATCCTCAAATCA
AAGCAAAGTCCCTACCTTCTTTTGTATCTTTTTTGAACCAGATTGAAACC
CCAGTCTATAGGAGAGTCTCATTGATACAAAAAAAAAAAAAAAAAA
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