CX300087

Overview
NameCX300087
Unique NameCX300087
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX300087 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.509e-20
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:   10 FGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 156
            FGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD
Sbjct:  307 FGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355
[Close]
BLAST of CX300087 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.110e-18
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:   10 FGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 156
            FGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELILAAADSAE AD
Sbjct:  303 FGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELILAAADSAEIAD 351
[Close]
BLAST of CX300087 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.601e-14
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:   10 FGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 156
            FGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+LAAADSAET D
Sbjct:  300 FGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVLAAADSAETVD 348
The following BLAST results are available for this feature:
BLAST of CX300087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
THI4_CITSI1.509e-20100.00Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL4.110e-1889.80Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH3.601e-1477.55Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC07005H08SK SaltLeaf1 Citrus clementina cDNA clone C07005H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300087 ID=CX300087; Name=CX300087; organism=Citrus clementina; type=EST; length=532bp
GCACGAGGATTTGGAGCAATGATGATATCGGGGCAGAAGGCTGCGCATTT
GGCGTTGAAGTCACTGGGCCAGCCGAATGCATTAGACGGTACATATGTGG
GAGGTGTTCACCCTGAGCTGATCTTAGCTGCAGCTGATTCTGCTGAGACT
GCTGATGGTTAATTTGATAATAACAGGCATCATCACTCATCAGCTGTGTG
CATGCAAATAAACTCTGGCAAAAAAGTAGTTGTATTTAGGTGGTTGTGAT
GGATGGTTGATGCGAATAATGAGATGATGTTGTGAGGTTTTGTGAATAAA
GTGTTTGTTTCCGGTCCATCATGCAACCTTTAATTTTAATTTCTTTCTCC
TCTTGTAAGAAACCGTTGTGAGTTTTTCGGGGGTGAATTTGCAGTTGCGT
ATCTAGTCCTTGTTATCTGTATTATGTGTAAGACTGCCCTTGGGCTGTTC
CCTTTTCTTTGCTTTGTATGTTTATAACTTGAGGCATCAGCCAATGGGAC
AGTGCTGATGTGATTAAGATCAATGATGAAGA
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