CX300177

Overview
NameCX300177
Unique NameCX300177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length421
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig357 contig Ccv1_Contig357:141..562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX300177 vs. ExPASy Swiss-Prot
Match: Y1648_ARATH (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.077e-37
Identity = 81/122 (66.39%), Postives = 93/122 (76.23%), Query Frame = 3 
Query:    9 MGNTIGGRRK-AKVMKIDGETIKLKTPIQASEVVKDYPGYVLLDSEAVKHFGIRAKPLEPRQQLKPKKVYFLVELPKLPDEEKIT--------RRVRSGIQMSAKDRLECLMLSRRAVSDLT 347
            MGN+I  +RK AKVMKIDGET ++KTP+ A EV  DYPGYVLLDS+AVKHFG+R+KPLEP Q LKPKK YFLVELPKLP E            RRV SGI + AK+RL+ LMLSRR VSD+T
Sbjct:    1 MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEPNQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSDVT 122
The following BLAST results are available for this feature:
BLAST of CX300177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1648_ARATH2.077e-3766.39Uncharacterized protein At1g66480 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC07007B05SK SaltLeaf1 Citrus clementina cDNA clone C07007B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300177 ID=CX300177; Name=CX300177; organism=Citrus clementina; type=EST; length=421bp
ATTAAGATATGGGGAACACAATAGGTGGAAGAAGGAAAGCAAAAGTGATG
AAGATTGATGGAGAAACAATAAAATTAAAGACTCCAATTCAGGCTAGTGA
AGTTGTTAAAGACTACCCAGGTTATGTTCTATTGGATTCAGAAGCTGTGA
AGCATTTTGGCATTAGGGCAAAACCCTTGGAGCCACGGCAACAACTTAAG
CCCAAGAAAGTATATTTCTTGGTGGAGCTGCCCAAGCTTCCTGATGAGGA
AAAGATCACGAGAAGAGTGCGTTCTGGGATTCAGATGAGCGCTAAGGACA
GGCTCGAGTGCTTGATGCTGTCAAGGAGGGCGGTTTCGGATCTTACTGCG
GTTAATGTAAGGTCGAGCCACGGCAGTGAGGTGGCACGGGACCGGGGACG
GGTCAGATGAGGGTCAAAATG
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