CX300187

Overview
NameCX300187
Unique NameCX300187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length429
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300187_ssr18 microsatellite CX300187_ssr18:18..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300187 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.054e-23
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 2 
Query:  266 FEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKF 427
            FEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILAT+SNGYDP F
Sbjct:  113 FEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSF 166
[Close]
BLAST of CX300187 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.376e-23
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 2 
Query:  266 FEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKF 427
            FEAGD RAKEYVSLLKSNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP F
Sbjct:  105 FEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSF 158
[Close]
BLAST of CX300187 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.682e-21
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 2 
Query:  266 FEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKF 427
            FEAGD RAKE+  +LKSNDPVGFN+VDVLAWGSIGHIVAYYILAT+SNGYDP F
Sbjct:   88 FEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPF 141
The following BLAST results are available for this feature:
BLAST of CX300187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSAG_SPIOL1.054e-2394.44Photosystem I reaction center subunit V, chloropla... [more]
PSAG_ARATH1.376e-2394.44Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU1.682e-2185.19Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionC07007C03SK SaltLeaf1 Citrus clementina cDNA clone C07007C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300187 ID=CX300187; Name=CX300187; organism=Citrus clementina; type=EST; length=429bp
CAGGAATTCGGCACGAGGAGAGAGAGAGAGAGAGAGAACTAGTCTCGAGT
TTTTTTTTTTTTTTTTTACTCAACGGCAATATGCAGAAAAATGTATTGCA
CAAGAAGATTGGAAAAAATACATCATTTTGTGGCAAGTAGTCGATTCCTT
ATCAGTTACATCTACAGAGGTTTACAGCAAGGGCAACATAACTCTAATAT
TTCCCAGGTGCAAAACTTTTTATATGATAAAGTTGATACTGGATTATTCA
TTGTCGATTGTTATCTTTGAAGCCGGTGATGTTCGTGCCAAGGAATATGT
TAGCCTCCTCAAATCCAACGACCCAGTTGGCTTTAACATTGTTGATGTTC
TCGCTTGGGGTTCCATTGGCCATATTGTCGCTTACTACATCTTGGCCACC
TCCAGCAACGGCTATGATCCCAAGTTCTT
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