CX300229

Overview
NameCX300229
Unique NameCX300229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_CITSI (50S ribosomal protein L14, chloroplastic OS=Citrus sinensis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.446e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_LIRTU (50S ribosomal protein L14, chloroplastic OS=Liriodendron tulipifera GN=rpl14 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.224e-31
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_PIPCE (50S ribosomal protein L14, chloroplastic OS=Piper cenocladum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.726e-31
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_ILLOL (50S ribosomal protein L14, chloroplastic OS=Illicium oligandrum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.726e-31
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_EUCGG (50S ribosomal protein L14, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.726e-31
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_MANES (50S ribosomal protein L14, chloroplastic OS=Manihot esculenta GN=rpl14 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.561e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_COFAR (50S ribosomal protein L14, chloroplastic OS=Coffea arabica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.650e-31
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_PHAAO (50S ribosomal protein L14, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rpl14 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.073e-31
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSE+IRAVIVRTCKEL+RDNGMIIRYDDNAAV+ID EGNPKGTR+FGAIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEIIRAVIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_NYMAL (50S ribosomal protein L14, chloroplastic OS=Nymphaea alba GN=rpl14 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.073e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFG+IARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGSIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_DRIGR (50S ribosomal protein L14, chloroplastic OS=Drimys granadensis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.073e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            +RSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   53 QRSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
The following BLAST results are available for this feature:
BLAST of CX300229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK14_CITSI1.446e-32100.0050S ribosomal protein L14, chloroplastic OS=Citrus... [more]
RK14_LIRTU1.224e-3198.5750S ribosomal protein L14, chloroplastic OS=Liriod... [more]
RK14_PIPCE2.726e-3197.1450S ribosomal protein L14, chloroplastic OS=Piper ... [more]
RK14_ILLOL2.726e-3197.1450S ribosomal protein L14, chloroplastic OS=Illici... [more]
RK14_EUCGG2.726e-3197.1450S ribosomal protein L14, chloroplastic OS=Eucaly... [more]
RK14_MANES3.561e-3195.7150S ribosomal protein L14, chloroplastic OS=Maniho... [more]
RK14_COFAR4.650e-3194.2950S ribosomal protein L14, chloroplastic OS=Coffea... [more]
RK14_PHAAO6.073e-3192.8650S ribosomal protein L14, chloroplastic OS=Phalae... [more]
RK14_NYMAL6.073e-3195.7150S ribosomal protein L14, chloroplastic OS=Nympha... [more]
RK14_DRIGR6.073e-3195.7150S ribosomal protein L14, chloroplastic OS=Drimys... [more]

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Properties
Property NameValue
Genbank descriptionC07007F11SK SaltLeaf1 Citrus clementina cDNA clone C07007F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300229 ID=CX300229; Name=CX300229; organism=Citrus clementina; type=EST; length=558bp
GTTAAAACCAAAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTC
GATAAAACCCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAG
TAGATGCTATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATA
GAAGTTATTATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATT
TTGTTGCTTCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAA
ATTATTAAAAGTATATGCGTGAGACATACTCTACTAAATTTTGAGTTATC
TATTTTATTTTCTTTCATACTATCACTATATCGCGGGCCCCTCTTATAAT
ACTTCAGGTGCTAATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTC
CCGGGCGATCGCACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGAT
CAATGACAACTGCAGCATTGTCATCGTACCGTATTATCATACCGTTATCA
CGTCTGAGTTCTTTACAAGTACGTACAATTACAGCTCTGATCACTTCTGA
TCTTTCTA
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