CX300292

Overview
NameCX300292
Unique NameCX300292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length416
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig309 contig Ccv1_Contig309:360..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.667e-21
Identity = 49/62 (79.03%), Postives = 49/62 (79.03%), Query Frame = 3
Query:   15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 200
            KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH             SKKR
Sbjct:   91 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152          
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.237e-18
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 3
Query:   15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 149
            KDGKYSQV+SNALD KLR+DLERLKKIR HRGLRHYWGLRVRGQH
Sbjct:   91 KDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135          
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.835e-17
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 3
Query:   15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 200
            KDGKYSQV++N+LD KLR+DLERLKKIR HRGLRHYWGLRVRGQH             SKK+
Sbjct:   91 KDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.973e-17
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 200
            KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:   91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.973e-17
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 200
            KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:   91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.973e-17
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 200
            KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:   91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.973e-17
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 200
            KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:   91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.973e-17
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 200
            KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:   91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.973e-17
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 200
            KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:   91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.973e-17
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 200
            KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:   91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
The following BLAST results are available for this feature:
BLAST of CX300292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RS18_ARATH4.667e-2179.0340S ribosomal protein S18 OS=Arabidopsis thaliana ... [more]
RS18_AEQIR8.237e-1891.1140S ribosomal protein S18 OS=Aequipecten irradians... [more]
RS18_BRABE1.835e-1767.7440S ribosomal protein S18 OS=Branchiostoma belcher... [more]
RS18_RAT6.973e-1766.1340S ribosomal protein S18 OS=Rattus norvegicus GN=... [more]
RS18_PIG6.973e-1766.1340S ribosomal protein S18 OS=Sus scrofa GN=RPS18 P... [more]
RS18_MOUSE6.973e-1766.1340S ribosomal protein S18 OS=Mus musculus GN=Rps18... [more]
RS18_ICTPU6.973e-1766.1340S ribosomal protein S18 OS=Ictalurus punctatus G... [more]
RS18_HUMAN6.973e-1766.1340S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]
RS18_DANRE6.973e-1766.1340S ribosomal protein S18 OS=Danio rerio GN=rps18 ... [more]
RS18_CAPHI6.973e-1766.1340S ribosomal protein S18 OS=Capra hircus GN=RPS18... [more]

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Properties
Property NameValue
Genbank descriptionC07008D09SK NTLeaf1 Citrus clementina cDNA clone C07008D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300292 ID=CX300292; Name=CX300292; organism=Citrus clementina; type=EST; length=416bp
CCCGGGCTGCAGGCAAGGATGGAAAGTATTCTCAGGTTGTATCCAATGCA
CTGGACATGAAGTTGAGAGATGACTTGGAGCGTCTGAAGAAGATCAGGAA
CCACCGTGGTCTCAGGCACTACTGGGGTCTTCGTGTCCGTGGACAACACA
CCAAGACCACCGGCCGTCGTGGAAAGACTGTTGGTGTCTCCAAGAAGCGT
TGAGCTGTCCTTTATCAATGTTTTGAACAATCTATACACATGTTCAGGAA
GAGTTTGGACTTGCTATTGCTGAACATTTGCATCAGACAATATTAGATTT
ATTTTCTTTTCTTTGGATGGGTTTTAAGCATTTGAACTGTCTGTCTTTTA
TCTATTATTTTCTCTATGGGAATATTTTTATTCAGATGTTTTGCAACATA
AAAAAAAAAAAAAAAA
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