CX300292
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 4.667e-21 Identity = 49/62 (79.03%), Postives = 49/62 (79.03%), Query Frame = 3 Query: 15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 200 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH SKKR Sbjct: 91 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 8.237e-18 Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 3 Query: 15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 149 KDGKYSQV+SNALD KLR+DLERLKKIR HRGLRHYWGLRVRGQH Sbjct: 91 KDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.835e-17 Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 3 Query: 15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 200 KDGKYSQV++N+LD KLR+DLERLKKIR HRGLRHYWGLRVRGQH SKK+ Sbjct: 91 KDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3) HSP 1 Score: 85.8853 bits (211), Expect = 6.973e-17 Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 200 KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH SKK+ Sbjct: 91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3) HSP 1 Score: 85.8853 bits (211), Expect = 6.973e-17 Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 200 KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH SKK+ Sbjct: 91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3) HSP 1 Score: 85.8853 bits (211), Expect = 6.973e-17 Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 200 KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH SKK+ Sbjct: 91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 6.973e-17 Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 200 KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH SKK+ Sbjct: 91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3) HSP 1 Score: 85.8853 bits (211), Expect = 6.973e-17 Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 200 KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH SKK+ Sbjct: 91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 6.973e-17 Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 200 KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH SKK+ Sbjct: 91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CX300292 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 6.973e-17 Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 15 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 200 KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH SKK+ Sbjct: 91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152 The following BLAST results are available for this feature:
BLAST of CX300292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300292 ID=CX300292; Name=CX300292; organism=Citrus clementina; type=EST; length=416bpback to top |