CX300376

Overview
NameCX300376
Unique NameCX300376
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length375
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: AL2B7_ARATH (Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.429e-33
Identity = 65/83 (78.31%), Postives = 75/83 (90.36%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPVKNPAWL 252
            RAN +R+GLAAGVFT++ DTA+ +MRALR GTVWINC+DV DA+IPFGGYK+SGIGREKGIYSLN YLQVKAVV  +KNPAWL
Sbjct:  452 RANNSRYGLAAGVFTQNLDTAHRLMRALRVGTVWINCFDVLDASIPFGGYKMSGIGREKGIYSLNNYLQVKAVVTSLKNPAWL 534          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: AL2B4_ARATH (Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.206e-32
Identity = 62/84 (73.81%), Postives = 75/84 (89.29%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPVKNPAWL 252
            +RAN+T++GLAAGVFTK+ DTAN + RAL+AGTVW+NC+DVFDAAIPFGGYK+SG GREKGIYSLN YLQ+KAVV  +  PAW+
Sbjct:  455 KRANETKYGLAAGVFTKNLDTANRVSRALKAGTVWVNCFDVFDAAIPFGGYKMSGNGREKGIYSLNNYLQIKAVVTALNKPAWI 538          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: ALDH2_PIG (Aldehyde dehydrogenase, mitochondrial OS=Sus scrofa GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.298e-22
Identity = 49/77 (63.64%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 234
            RAN +++GLAA VFTK  D AN + +AL+AGTVW+NCYDVF A  PFGGYKLSG GRE G Y L AY +VK V   V
Sbjct:  440 RANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKLSGSGRELGEYGLQAYTEVKTVTVKV 516          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: ALDH2_BOVIN (Aldehyde dehydrogenase, mitochondrial OS=Bos taurus GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.298e-22
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVV--QPVKN 240
            RAN +++GLAA VFTK  D AN + +AL+AGTVW+NCYDVF A  PFGGYKLSG GRE G Y L AY +VK V    P KN
Sbjct:  439 RANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKLSGSGRELGEYGLQAYTEVKTVTVRVPQKN 519          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: ALDH2_RAT (Aldehyde dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.613e-22
Identity = 49/77 (63.64%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 234
            RAN +++GLAA VFTK  D AN + +AL+AGTVWINCYDVF A  PFGGYK+SG GRE G Y L AY +VK V   V
Sbjct:  438 RANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTVKV 514          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: ALDH2_MESAU (Aldehyde dehydrogenase, mitochondrial OS=Mesocricetus auratus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.613e-22
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVV--QPVKN 240
            RAN +++GLAA VFTK  D AN + +AL+AGTVWINCYDVF A  PFGGYK+SG GRE G Y L AY +VK V    P KN
Sbjct:  419 RANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTIKVPQKN 499          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: ALDH2_MOUSE (Aldehyde dehydrogenase, mitochondrial OS=Mus musculus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.331e-22
Identity = 49/77 (63.64%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 234
            RAN +++GLAA VFTK  D AN + +AL+AGTVWINCYDVF A  PFGGYK+SG GRE G Y L AY +VK V   V
Sbjct:  438 RANDSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTVKV 514          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: ALDH2_HORSE (Aldehyde dehydrogenase, mitochondrial OS=Equus caballus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.331e-22
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVV--QPVKN 240
            RAN +++GLAA VFTK  D AN + +AL+AGTVWINCYDVF A  PFGGYK+SG GRE G Y L AY +VK V    P KN
Sbjct:  419 RANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGNGRELGEYGLQAYTEVKTVTIKVPQKN 499          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: ALDH2_HUMAN (Aldehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.633e-21
Identity = 48/77 (62.34%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 234
            RAN + +GLAA VFTK  D AN + +AL+AGTVW+NCYDVF A  PFGGYK+SG GRE G Y L AY +VK V   V
Sbjct:  436 RANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTVKV 512          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: ALDH2_PONAB (Aldehyde dehydrogenase, mitochondrial OS=Pongo abelii GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.206e-21
Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 234
            RAN + +GLAA VFTK  D AN + +AL+AGTVW+NCY+VF A  PFGGYK+SG GRE G Y L AY +VK V   V
Sbjct:  436 RANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYNVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTVKV 512          
The following BLAST results are available for this feature:
BLAST of CX300376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
AL2B7_ARATH2.429e-3378.31Aldehyde dehydrogenase family 2 member B7, mitocho... [more]
AL2B4_ARATH1.206e-3273.81Aldehyde dehydrogenase family 2 member B4, mitocho... [more]
ALDH2_PIG4.298e-2263.64Aldehyde dehydrogenase, mitochondrial OS=Sus scrof... [more]
ALDH2_BOVIN4.298e-2262.96Aldehyde dehydrogenase, mitochondrial OS=Bos tauru... [more]
ALDH2_RAT5.613e-2263.64Aldehyde dehydrogenase, mitochondrial OS=Rattus no... [more]
ALDH2_MESAU5.613e-2262.96Aldehyde dehydrogenase, mitochondrial OS=Mesocrice... [more]
ALDH2_MOUSE7.331e-2263.64Aldehyde dehydrogenase, mitochondrial OS=Mus muscu... [more]
ALDH2_HORSE7.331e-2262.96Aldehyde dehydrogenase, mitochondrial OS=Equus cab... [more]
ALDH2_HUMAN1.633e-2162.34Aldehyde dehydrogenase, mitochondrial OS=Homo sapi... [more]
ALDH2_PONAB6.206e-2161.04Aldehyde dehydrogenase, mitochondrial OS=Pongo abe... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07009E02SK SaltLeaf1 Citrus clementina cDNA clone C07009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300376 ID=CX300376; Name=CX300376; organism=Citrus clementina; type=EST; length=375bp
AGAAGAGCAAATAAAACACGCTTTGGTCTAGCTGCTGGGGTTTTCACCAA
GAGTGCAGACACTGCTAACACCATGATGCGTGCACTGAGAGCTGGGACTG
TATGGATTAACTGCTACGACGTGTTTGATGCTGCTATTCCTTTCGGTGGG
TACAAGCTGAGTGGCATAGGCCGGGAAAAGGGAATTTACAGCCTTAACGC
TTACTTGCAAGTAAAGGCCGTCGTTCAACCTGTGAAGAACCCAGCATGGC
TCTAGTTTCCTGAAGTTCCCCCTCCCTTTTAATCTGTGTTTATGAATAAG
GACAGCGTGCAAATATCAGCTTGTAATTATGGAGCAAATGGATAATTTAC
TTTAGAACAAACTTAAACTAAACTA
back to top