CX300437
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1) HSP 1 Score: 246.128 bits (627), Expect = 4.074e-65 Identity = 122/127 (96.06%), Postives = 125/127 (98.43%), Query Frame = 2 Query: 2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHA+GIAKHGEIDYEA+VKL EGFNGADLRN+CTEAGM AIRAERDYVIHEDFMKAVRK Sbjct: 253 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRK 379
BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 5.321e-65 Identity = 122/127 (96.06%), Postives = 125/127 (98.43%), Query Frame = 2 Query: 2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382 TSADREIQRTLMELLNQLDGFD LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRM+ILKIHAAGIAKHGEIDYEA+VKLAEGFNGADLRN+CTEAGM AIRAERDYVIHEDFMKAVRK Sbjct: 253 TSADREIQRTLMELLNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRK 379
BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 1.833e-57 Identity = 107/127 (84.25%), Postives = 117/127 (92.13%), Query Frame = 2 Query: 2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382 TSADREIQRTLMELLNQ+DGFD L KVK+IMATNRPDVLDPALLRPGRLDRKIEIPLPNE R+++LKIHAA I KHG++DYEA+ KLA+GFN ADLRNVCTEAGM AIRAERDYV+ EDFMKAVRK Sbjct: 251 TSADREIQRTLMELLNQMDGFDTLSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLADGFNAADLRNVCTEAGMFAIRAERDYVMEEDFMKAVRK 377
BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2) HSP 1 Score: 217.238 bits (552), Expect = 2.027e-56 Identity = 109/127 (85.83%), Postives = 118/127 (92.91%), Query Frame = 2 Query: 2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382 TSADREIQRTLMELLNQLDGFD LGKVK+IMATNRPD LDPALLRPGRLDRKIEI LPNEQSR+EILKIH+ I KHGEID+EAVVKL++GF+ ADLRNVCTEAGM AIRAER++VI EDFMKAVRK Sbjct: 264 TSADREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRK 390
BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 7.701e-56 Identity = 105/127 (82.68%), Postives = 116/127 (91.34%), Query Frame = 2 Query: 2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382 TSADREIQRTLMELLNQ+DGFD L +VKMIMATNRPD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA I KHGEIDYEA+VKL++GFNGADLRNVCTEAGM AIRA+ D+V+ EDFMKAVRK Sbjct: 247 TSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRK 373
BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 7.701e-56 Identity = 105/127 (82.68%), Postives = 116/127 (91.34%), Query Frame = 2 Query: 2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382 TSADREIQRTLMELLNQ+DGFD L +VKMIMATNRPD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA I KHGEIDYEA+VKL++GFNGADLRNVCTEAGM AIRA+ D+V+ EDFMKAVRK Sbjct: 247 TSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRK 373
BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 7.701e-56 Identity = 105/127 (82.68%), Postives = 116/127 (91.34%), Query Frame = 2 Query: 2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382 TSADREIQRTLMELLNQ+DGFD L +VKMIMATNRPD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA I KHGEIDYEA+VKL++GFNGADLRNVCTEAGM AIRA+ D+V+ EDFMKAVRK Sbjct: 247 TSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRK 373
BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 4.992e-55 Identity = 104/127 (81.89%), Postives = 115/127 (90.55%), Query Frame = 2 Query: 2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382 TSADREIQRTLMELLNQ+DGFD L +VKMIMATNRPD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA I KHGEIDYEA+VKL++GFNGADL NVCTEAGM AIRA+ D+V+ EDFMKAVRK Sbjct: 247 TSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGMFAIRADHDFVVQEDFMKAVRK 373
BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2) HSP 1 Score: 196.823 bits (499), Expect = 2.834e-50 Identity = 98/127 (77.17%), Postives = 107/127 (84.25%), Query Frame = 2 Query: 2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382 TSADREIQRTLMELLNQ+DGFD LG+ K+IMATNRPD LDPALLRPGRLDRKIEIPLPNE RMEILKIH ++K GEIDYEA+VKL +G NGADLRNV TEAG AI+ +RDYVI D M A RK Sbjct: 246 TSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARK 372
BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4) HSP 1 Score: 189.119 bits (479), Expect = 5.910e-48 Identity = 91/127 (71.65%), Postives = 106/127 (83.46%), Query Frame = 2 Query: 2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382 TSADREIQRTLMELL Q+DGFD LG+ K+IMATNRPD LDPALLRPGRLDRK+EIPLPNE R+EI KIH A + K GE D+EA VK+++GFNGAD+RN TEAG AIR +RD++ +D MKAVRK Sbjct: 295 TSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 The following BLAST results are available for this feature:
BLAST of CX300437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 289
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300437 ID=CX300437; Name=CX300437; organism=Citrus clementina; type=EST; length=383bpback to top |