CX300446
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 2.616e-56 Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 3 Query: 69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392 MGKT GMGA RKLK+HRRTQRWAD SYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG Sbjct: 1 MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 108
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 4.462e-56 Identity = 104/108 (96.30%), Postives = 104/108 (96.30%), Query Frame = 3 Query: 69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392 MGKTRGMGA RKLK HRR QRWAD SYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG Sbjct: 1 MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 108
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2) HSP 1 Score: 209.534 bits (532), Expect = 4.177e-54 Identity = 102/108 (94.44%), Postives = 102/108 (94.44%), Query Frame = 3 Query: 69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392 MGKTRGMGAGRKLK R QRWAD YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG Sbjct: 1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 108
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2) HSP 1 Score: 202.601 bits (514), Expect = 5.106e-52 Identity = 100/108 (92.59%), Postives = 101/108 (93.52%), Query Frame = 3 Query: 69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392 MGKTRGMGAGRKLK R TQRWAD YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG Sbjct: 1 MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 108
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 5.468e-46 Identity = 86/109 (78.90%), Postives = 92/109 (84.40%), Query Frame = 3 Query: 69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392 MGK RG+ RKLK HRR QRW D YKKSHLG WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKG Sbjct: 1 MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKG 109
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 1.218e-45 Identity = 85/109 (77.98%), Postives = 94/109 (86.24%), Query Frame = 3 Query: 69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392 MGK +G+ A RKLKTHR+ QRW D YKK+HLG WK PF +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKG Sbjct: 1 MGKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKG 109
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 4.629e-45 Identity = 84/109 (77.06%), Postives = 92/109 (84.40%), Query Frame = 3 Query: 69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392 MGK RG+ RK ++HRR QRW D YKK+HLG WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLNYIEENDEVL+AGFGRKG Sbjct: 1 MGKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKG 109
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 1.031e-44 Identity = 82/109 (75.23%), Postives = 93/109 (85.32%), Query Frame = 3 Query: 69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392 MGK +G+ RKLKTHR+ QRW D YKK+H+G WK PF G+SHAKGIVLEKIG+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN++EENDEVL++GFGR G Sbjct: 1 MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSG 109
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 3.918e-44 Identity = 82/109 (75.23%), Postives = 91/109 (83.49%), Query Frame = 3 Query: 69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392 MGK RG+ RK HRR QRWAD YKK+H+G WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKG Sbjct: 1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKG 109
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3) HSP 1 Score: 176.407 bits (446), Expect = 3.918e-44 Identity = 83/109 (76.15%), Postives = 93/109 (85.32%), Query Frame = 3 Query: 69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392 MGK RG+ RKL++HRR Q+W D YKK+HLG K PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKG Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKG 109 The following BLAST results are available for this feature:
BLAST of CX300446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300446 ID=CX300446; Name=CX300446; organism=Citrus clementina; type=EST; length=394bpback to top |