CX300446

Overview
NameCX300446
Unique NameCX300446
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig376 contig Ccv1_Contig376:8..401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 2.616e-56
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 3
Query:   69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392
            MGKT GMGA RKLK+HRRTQRWAD SYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG
Sbjct:    1 MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 108          
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 4.462e-56
Identity = 104/108 (96.30%), Postives = 104/108 (96.30%), Query Frame = 3
Query:   69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392
            MGKTRGMGA RKLK HRR QRWAD SYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG
Sbjct:    1 MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 108          
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 4.177e-54
Identity = 102/108 (94.44%), Postives = 102/108 (94.44%), Query Frame = 3
Query:   69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392
            MGKTRGMGAGRKLK  R  QRWAD  YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG
Sbjct:    1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 108          
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 5.106e-52
Identity = 100/108 (92.59%), Postives = 101/108 (93.52%), Query Frame = 3
Query:   69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392
            MGKTRGMGAGRKLK  R TQRWAD  YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG
Sbjct:    1 MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 108          
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.468e-46
Identity = 86/109 (78.90%), Postives = 92/109 (84.40%), Query Frame = 3
Query:   69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392
            MGK RG+   RKLK HRR QRW D  YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKG
Sbjct:    1 MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKG 109          
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.218e-45
Identity = 85/109 (77.98%), Postives = 94/109 (86.24%), Query Frame = 3
Query:   69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392
            MGK +G+ A RKLKTHR+ QRW D  YKK+HLG  WK  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKG
Sbjct:    1 MGKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKG 109          
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.629e-45
Identity = 84/109 (77.06%), Postives = 92/109 (84.40%), Query Frame = 3
Query:   69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392
            MGK RG+   RK ++HRR QRW D  YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLNYIEENDEVL+AGFGRKG
Sbjct:    1 MGKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKG 109          
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.031e-44
Identity = 82/109 (75.23%), Postives = 93/109 (85.32%), Query Frame = 3
Query:   69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392
            MGK +G+   RKLKTHR+ QRW D  YKK+H+G  WK  PF G+SHAKGIVLEKIG+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN++EENDEVL++GFGR G
Sbjct:    1 MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSG 109          
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.918e-44
Identity = 82/109 (75.23%), Postives = 91/109 (83.49%), Query Frame = 3
Query:   69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392
            MGK RG+   RK   HRR QRWAD  YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKG
Sbjct:    1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKG 109          
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 3.918e-44
Identity = 83/109 (76.15%), Postives = 93/109 (85.32%), Query Frame = 3
Query:   69 MGKTRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 392
            MGK RG+   RKL++HRR Q+W D  YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKG
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKG 109          
The following BLAST results are available for this feature:
BLAST of CX300446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_EUPES2.616e-5696.3040S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS23_FRAAN4.462e-5696.3040S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS232_ARATH4.177e-5494.4440S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH5.106e-5292.5940S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_LUMRU5.468e-4678.9040S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_BRUMA1.218e-4577.9840S ribosomal protein S23 OS=Brugia malayi GN=rps-... [more]
RS23_DERVA4.629e-4577.0640S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_CAEEL1.031e-4475.2340S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
RS23_SPOFR3.918e-4475.2340S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_RAT3.918e-4476.1540S ribosomal protein S23 OS=Rattus norvegicus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07010D01SK SaltLeaf1 Citrus clementina cDNA clone C07010D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300446 ID=CX300446; Name=CX300446; organism=Citrus clementina; type=EST; length=394bp
GGTGTTTCTTCTCTTCGCCTTAACTTCTACACAGCCTCGTAGCAGTCGAG
TAACTACAATCAGGAATCATGGGGAAGACACGTGGTATGGGAGCTGGTCG
CAAGCTGAAGACTCACCGTAGGACTCAAAGGTGGGCTGATAATTCATACA
AAAAGTCTCACCTCGGCAATGAGTGGAAGAAGCCATTTGCTGGTTCTTCC
CATGCTAAAGGAATTGTTCTTGAGAAGATAGGTATTGAAGCTAAGCAGCC
TAACTCTGCTATTCGTAAGTGTGCTAGAGTTCAACTTATCAAAAACGGAA
AGAAGATTGCCGCTTTTGTTCCAAATGATGGTTGCTTGAACTATATTGAA
GAAAATGATGAGGTGTTGATTGCTGGATTTGGACGTAAGGGACA
back to top