CX300451

Overview
NameCX300451
Unique NameCX300451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length386
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300451_ssr69 microsatellite CX300451_ssr69:69..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig30 contig Ccv1_Contig30:687..1072. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300451 vs. ExPASy Swiss-Prot
Match: PSBP_CUCSA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 2.304e-60
Identity = 113/132 (85.61%), Postives = 120/132 (90.91%), Query Frame = 1
Query:    1 TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLI 384
            TD+LPY+GDGFKLSIPSKWNPSKEREFPGQVLRYEDNFD NSN+SVII PTDKKSI D+GSPEEFLSKVDYLLGKQAY GKT+SEGGFDPDAVATANILEA+        YYF+SVLTRTADGDEGGKHQLI
Sbjct:   93 TDYLPYSGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKVDYLLGKQAYFGKTASEGGFDPDAVATANILEATASNVNGKDYYFVSVLTRTADGDEGGKHQLI 224          
BLAST of CX300451 vs. ExPASy Swiss-Prot
Match: PSBP_SOLTU (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum tuberosum GN=PSBP PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 6.938e-57
Identity = 108/132 (81.82%), Postives = 114/132 (86.36%), Query Frame = 1
Query:    1 TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLI 384
            TDFLPYNGDGFKL IP+KWNPSKE EFPGQVLRYEDNFD  SN+ V +TPTDKKSITDYGSPEEFLSKVDYLLGKQAY GKT SEGGF+  AVATAN+LEAS        YY+LSVLTRTADGDEGGKHQLI
Sbjct:   90 TDFLPYNGDGFKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQAYFGKTDSEGGFESGAVATANLLEASSATVGGKQYYYLSVLTRTADGDEGGKHQLI 221          
BLAST of CX300451 vs. ExPASy Swiss-Prot
Match: PSBP1_ARATH (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana GN=PSBP1 PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 2.637e-56
Identity = 103/132 (78.03%), Postives = 120/132 (90.91%), Query Frame = 1
Query:    1 TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLI 384
            TDFLPYNGDGFK+ +P+KWNPSKE E+PGQVLR+EDNFD  SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SEGGFD +AVATANILE+S +     PYY+LSVLTRTADGDEGGKHQLI
Sbjct:   93 TDFLPYNGDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQLI 224          
BLAST of CX300451 vs. ExPASy Swiss-Prot
Match: PSBP_SOLLC (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum lycopersicum GN=PSBP PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.002e-55
Identity = 105/132 (79.55%), Postives = 113/132 (85.61%), Query Frame = 1
Query:    1 TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLI 384
            TDFLPYNGDGFKL +P+KWNPSKE E+PGQVLRYEDNFD  SN+ V +TPTDKKSITDYGSPEEFLSKVDYLLGKQAY GKT SEGGF+  AVAT N+LEAS        YY+LSVLTRTADGDEGGKHQLI
Sbjct:   88 TDFLPYNGDGFKLQVPAKWNPSKEVEYPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQAYFGKTDSEGGFESGAVATRNLLEASSATVGGKEYYYLSVLTRTADGDEGGKHQLI 219          
BLAST of CX300451 vs. ExPASy Swiss-Prot
Match: PSBP_FRIAG (Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.807e-55
Identity = 105/132 (79.55%), Postives = 112/132 (84.85%), Query Frame = 1
Query:    1 TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLI 384
            TDFLPY GDGF L IP+KWNPSKE EFPGQVLRYEDNFD  SNVSV +TPT KKSITDYG+PEEFLS VDYLLGKQAYSGKT+SEGGFDPD+VATANILE S        YY +SVLTRTADGDEGGKH +I
Sbjct:   94 TDFLPYTGDGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEEFLSTVDYLLGKQAYSGKTASEGGFDPDSVATANILEVSTPVVGGKQYYNISVLTRTADGDEGGKHHVI 225          
BLAST of CX300451 vs. ExPASy Swiss-Prot
Match: PSBP_PEA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum GN=PSBP PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 4.972e-55
Identity = 104/132 (78.79%), Postives = 114/132 (86.36%), Query Frame = 1
Query:    1 TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLI 384
            TD+LPYNGDGFKL +P+KWNPSKEREFPGQVLRYEDNFD  SNVSV++  TDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T SEGGFD +AVA ANILE+S        YY +SVLTRTADGDEGGKHQLI
Sbjct:   89 TDYLPYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLI 220          
BLAST of CX300451 vs. ExPASy Swiss-Prot
Match: PSBP_SINAL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 5.497e-54
Identity = 98/132 (74.24%), Postives = 118/132 (89.39%), Query Frame = 1
Query:    1 TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLI 384
            TDF  Y+GDGF++ +P+KWNPS+E E+PGQVLRYEDNFD  SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SEGGFD +AVATANILE +++     PYY+LSVLTRTADGDEGGKHQLI
Sbjct:   90 TDFTAYSGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADGDEGGKHQLI 221          
BLAST of CX300451 vs. ExPASy Swiss-Prot
Match: PSBP2_TOBAC (Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 5.497e-54
Identity = 102/132 (77.27%), Postives = 113/132 (85.61%), Query Frame = 1
Query:    1 TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLI 384
            TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD  SNV V ITPTDKKSITD+GSPE+FLS+VDYLLG+QAYSGKT SEGGF+ DAVA AN+LE S       PYY+LSVLTRTADG+EGGKHQLI
Sbjct:   95 TDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGKHQLI 226          
BLAST of CX300451 vs. ExPASy Swiss-Prot
Match: PSBP_SPIOL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia oleracea GN=PSBP PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.225e-53
Identity = 98/132 (74.24%), Postives = 114/132 (86.36%), Query Frame = 1
Query:    1 TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLI 384
            T+F+PYNGDGFKL +PSKWNPSKE+EFPGQVLRYEDNFD  SN+SV++ PTDKKSITD+GSPE+FLS+VDYLLGKQAY GKT SEGGFD   VA+AN+LE+S        YY ++VLTRTADGDEGGKHQ+I
Sbjct:   97 TEFMPYNGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQVDYLLGKQAYFGKTDSEGGFDSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEGGKHQVI 228          
BLAST of CX300451 vs. ExPASy Swiss-Prot
Match: PSBP1_TOBAC (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana tabacum GN=PSBP1 PE=3 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 1.225e-53
Identity = 102/132 (77.27%), Postives = 111/132 (84.09%), Query Frame = 1
Query:    1 TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLI 384
            TDFL YNGDGFKL +P+KWNPSKE EFPGQVLRYEDNFD  SN+ V +TPTDKKSITDYGSPEEFL++VD+LLGKQAY GKT SEGGF+  AVATAN+LE S        YY LSVLTRTADGDEGGKHQLI
Sbjct:   98 TDFLAYNGDGFKLQVPAKWNPSKEVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPEEFLTQVDFLLGKQAYFGKTDSEGGFESGAVATANLLETSSSTVGGKEYYILSVLTRTADGDEGGKHQLI 229          
The following BLAST results are available for this feature:
BLAST of CX300451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSBP_CUCSA2.304e-6085.61Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SOLTU6.938e-5781.82Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP1_ARATH2.637e-5678.03Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP_SOLLC1.002e-5579.55Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_FRIAG3.807e-5579.55Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_PEA4.972e-5578.79Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SINAL5.497e-5474.24Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP2_TOBAC5.497e-5477.27Oxygen-evolving enhancer protein 2-2, chloroplasti... [more]
PSBP_SPIOL1.225e-5374.24Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP1_TOBAC1.225e-5377.27Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionC07010D06SK SaltLeaf1 Citrus clementina cDNA clone C07010D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300451 ID=CX300451; Name=CX300451; organism=Citrus clementina; type=EST; length=386bp
ACTGACTTCTTGCCATACAATGGAGATGGATTCAAGCTGTCGATTCCCTC
AAAATGGAACCCCAGCAAAGAGAGAGAGTTCCCTGGTCAGGTTCTTAGAT
ACGAAGACAACTTTGATCCCAACAGCAATGTCTCCGTCATAATCACCCCA
ACTGACAAGAAATCCATCACTGACTACGGTTCCCCCGAGGAATTCCTCAG
TAAGGTGGACTACTTGCTGGGAAAACAAGCCTATTCCGGCAAAACTTCGT
CTGAGGGTGGTTTCGACCCTGATGCTGTGGCAACAGCTAACATCTTGGAG
GCTTCAGTCCGACCACCATACTACTTCTTGTCTGTATTAACAAGAACTGC
TGATGGAGATGAAGGTGGCAAGCATCAACTAATTAC
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