CX300469

Overview
NameCX300469
Unique NameCX300469
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX300469 vs. ExPASy Swiss-Prot
Match: AMO_PEA (Primary amine oxidase OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.291e-17
Identity = 37/77 (48.05%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    7 QGTINMFLRPIEGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVATSSTR-PGFKINGNTV 234
            + T+N+++RPI GITIV D++ MK+ EY+DR++  +P  E TEY++SK  PPFGP+ +S+ +   + PGF+ING++V
Sbjct:  187 ESTVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSV 263
[Close]
BLAST of CX300469 vs. ExPASy Swiss-Prot
Match: AMO_LENCU (Primary amine oxidase (Fragment) OS=Lens culinaris PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 37/77 (48.05%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:    7 QGTINMFLRPIEGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVATSSTR-PGFKINGNTV 234
            + T+N+++RPI GITIV D++ MK+ EY+DR+   +P  E TEY++SK  PPFGP+ +S+ +   + PGF+ING +V
Sbjct:  180 ESTVNIYVRPITGITIVADLDLMKIVEYHDRDTEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGTSV 256
The following BLAST results are available for this feature:
BLAST of CX300469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AMO_PEA5.291e-1748.05Primary amine oxidase OS=Pisum sativum PE=1 SV=1[more]
AMO_LENCU1.539e-1648.05Primary amine oxidase (Fragment) OS=Lens culinaris... [more]
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Properties
Property NameValue
Genbank descriptionC07010E12SK SaltLeaf1 Citrus clementina cDNA clone C07010E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300469 ID=CX300469; Name=CX300469; organism=Citrus clementina; type=EST; length=398bp
ACGGATCAAGGGACTATCAATATGTTTTTGAGGCCAATCGAAGGGATAAC
GATTGTTGTTGATATAGAGGAGATGAAAGTAACTGAGTACAACGACAGGG
AGGTAGCTCCGATACCAAAACCCGAGCCCACCGAATACAGACTGTCGAAG
CTGAAGCCACCCTTTGGTCCAAGGCTTAATAGCGTCGCCACCTCGTCAAC
GAGACCTGGGTTCAAGATTAATGGCAACACTGTCAAGTAAGTCTAGTCGA
CTAATTACCCTTTTGTTTATTGTATAAATATCCTAATTAAAGGTAATGCC
ATACTTAAATACTGGCATACAGAGGGCTTTTAAATTGGAAAAACTTATCT
TGGGTGCTTCAAAAACATTGCACACTTGACCAAAAAAAAAAAAAAAAA
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