CX300489

Overview
NameCX300489
Unique NameCX300489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length402
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAEB_NICSY (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.350e-26
Identity = 52/61 (85.25%), Postives = 58/61 (95.08%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 255
            KRG KV++LR+ESYWY G+GSVVAVDQDP +RYPVVVRFNKVNYANVSTNNYALDE+EEVK
Sbjct:   83 KRGTKVRVLRKESYWYKGVGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEVEEVK 143          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_SPIOL (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.424e-25
Identity = 52/60 (86.67%), Postives = 59/60 (98.33%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 252
            KRG+KV+I+R+ESYWY G+GSVVAVDQDPK+RYPVVVRFNKVNYANVSTNNYALDEI+EV
Sbjct:   65 KRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEV 124          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE2_ARATH (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana GN=PSAE2 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.173e-25
Identity = 52/61 (85.25%), Postives = 58/61 (95.08%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 255
            KRG+KVKILR+ESYWY  +GSVVAVDQDPK+RYPVVVRF KVNYAN+STNNYALDE+EEVK
Sbjct:   85 KRGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEVK 145          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAEA_NICSY (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.413e-25
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 255
            KRG KV+ILR+ESYWY G GSVVA DQDP +RYPVVVRFNKVNYANVSTNNYALDEIEEVK
Sbjct:   81 KRGTKVRILRKESYWYKGTGSVVACDQDPNTRYPVVVRFNKVNYANVSTNNYALDEIEEVK 141          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE1_ARATH (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.575e-24
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 252
            KRG+KVKILRRESYW+  +GSVVAVDQDPK+RYPVVVRF KVNYAN+STNNYALDE+EEV
Sbjct:   82 KRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEV 141          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_HORVU (Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare GN=PSAE PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.816e-24
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 252
            KRG KVKILRRESYWYNG GSVV VDQDP +RYPVVVRF KVNYA VSTNNYALDEI+EV
Sbjct:   86 KRGTKVKILRRESYWYNGTGSVVTVDQDPNTRYPVVVRFAKVNYAGVSTNNYALDEIKEV 145          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_GLOVI (Photosystem I reaction center subunit IV OS=Gloeobacter violaceus GN=psaE PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.517e-16
Identity = 35/61 (57.38%), Postives = 50/61 (81.97%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 255
            +RGAKV+ILR+ESYWY  +G+V +VD+  K+ YPV VRF KVNY+ ++TNN+ + E+EEV+
Sbjct:    4 ERGAKVRILRKESYWYREVGTVASVDKSEKTIYPVTVRFEKVNYSGINTNNFGVSELEEVE 64          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_THEEB (Photosystem I reaction center subunit IV OS=Thermosynechococcus elongatus (strain BP-1) GN=psaE PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.998e-16
Identity = 39/67 (58.21%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYALDEIEEV 252
            +RG+KVKILR ESYWYN +G+V +VDQ P  +YPV+VRF+KVNY       + V+TNN+AL E++EV
Sbjct:    3 QRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFALHEVQEV 69          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_SYNEN (Photosystem I reaction center subunit IV OS=Synechococcus elongatus naegeli GN=psaE PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.998e-16
Identity = 39/67 (58.21%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYALDEIEEV 252
            +RG+KVKILR ESYWYN +G+V +VDQ P  +YPV+VRF+KVNY       + V+TNN+AL E++EV
Sbjct:    3 QRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFALHEVQEV 69          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_CYAPA (Photosystem I reaction center subunit IV OS=Cyanophora paradoxa GN=psaE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.336e-15
Identity = 36/61 (59.02%), Postives = 52/61 (85.25%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 255
            +RG+KV+ILR+ESYWY  IG+V ++DQ    +YPV+VRF KVNY+NV++NN++LDE+ EV+
Sbjct:    3 QRGSKVRILRKESYWYQEIGTVASIDQSG-IKYPVIVRFEKVNYSNVNSNNFSLDEVVEVE 62          
The following BLAST results are available for this feature:
BLAST of CX300489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PSAEB_NICSY8.350e-2685.25Photosystem I reaction center subunit IV B, chloro... [more]
PSAE_SPIOL1.424e-2586.67Photosystem I reaction center subunit IV, chloropl... [more]
PSAE2_ARATH3.173e-2585.25Photosystem I reaction center subunit IV B, chloro... [more]
PSAEA_NICSY5.413e-2586.89Photosystem I reaction center subunit IV A, chloro... [more]
PSAE1_ARATH1.575e-2485.00Photosystem I reaction center subunit IV A, chloro... [more]
PSAE_HORVU7.816e-2486.67Photosystem I reaction center subunit IV, chloropl... [more]
PSAE_GLOVI3.517e-1657.38Photosystem I reaction center subunit IV OS=Gloeob... [more]
PSAE_THEEB5.998e-1658.21Photosystem I reaction center subunit IV OS=Thermo... [more]
PSAE_SYNEN5.998e-1658.21Photosystem I reaction center subunit IV OS=Synech... [more]
PSAE_CYAPA1.336e-1559.02Photosystem I reaction center subunit IV OS=Cyanop... [more]

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Properties
Property NameValue
Genbank descriptionC07010G08SK SaltLeaf1 Citrus clementina cDNA clone C07010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300489 ID=CX300489; Name=CX300489; organism=Citrus clementina; type=EST; length=402bp
GCTGCTGCCACCACCGCTGCCCCAGCTGAAGGTGAAGCAGCTCCCAAGCC
CAAGCCACCTCCGATTGGACCCAAGAGAGGCGCCAAGGTTAAGATTCTCA
GGAGGGAGTCCTACTGGTACAATGGCATTGGATCTGTGGTTGCTGTTGAC
CAGGATCCCAAGAGTCGGTACCCAGTTGTGGTTCGATTCAACAAGGTTAA
CTATGCAAATGTATCGACGAACAACTATGCATTGGATGAGATCGAAGAAG
TTAAATGAGTTATGTAATTTTGATTTGCATATTATTCCCCGCTCTAGATT
AAGCCTTTGTGTGCCAGGAATGTGTATTCTATTCTCCAAGTGAATTCTTC
TTCTGTCTACTTCGCCATCATGTTTATGCTTATCCAAAAAAAAAAAAAAA
AA
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