CX300491

Overview
NameCX300491
Unique NameCX300491
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 2.196e-43
Identity = 94/134 (70.15%), Postives = 99/134 (73.88%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXXQGLMV 403
            EGIVPGGGA LVHLS  +PAIK+KLEDADERLGADIVQKALVAPA+LIA NA             SEW  GYNAMTD YEN+L+AGVIDPAKVTRCALQNAASVAGMVLTTQAI               QGLMV
Sbjct:  413 EGIVPGGGATLVHLSTVIPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSEWEIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPTAAPPQGLMV 546          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 3.171e-42
Identity = 90/134 (67.16%), Postives = 98/134 (73.13%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXXQGLMV 403
            EGIVPGGG ALVHLS +VPAIK+KLEDADERLGADIVQKALVAPA+LIA NA              EW  GYNAMTD YEN++++GVIDPAKVTRCALQNAASVAGMVLTTQAI               QGL +
Sbjct:  454 EGIVPGGGTALVHLSGYVPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGEWEVGYNAMTDTYENLVESGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAAVAAAPQGLTI 587          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 5.981e-41
Identity = 88/134 (65.67%), Postives = 97/134 (72.39%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXXQGLMV 403
            EGIVPGGGAALVHLS  +PAIK+  EDADERLGADIVQKAL++PA+LIA NA             S+W  GYNAMTD YEN+ +AGVIDPAKVTRCALQNAASVAGMVLTTQAI               +GLMV
Sbjct:  453 EGIVPGGGAALVHLSTVIPAIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSDWENGYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 586          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 7.811e-41
Identity = 84/114 (73.68%), Postives = 94/114 (82.46%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIVPGGGAA VHLS +VPAIK+ +ED DERLGADI+QKAL APASLIA+NA             SEW  GYNAMTDKYEN++++GVIDPAKVTRCALQNAASV+GMVLTTQAI
Sbjct:  409 EGIVPGGGAAYVHLSTYVPAIKETIEDHDERLGADIIQKALQAPASLIANNAGVEGEVVIEKIKESEWEMGYNAMTDKYENLIESGVIDPAKVTRCALQNAASVSGMVLTTQAI 522          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.247e-38
Identity = 89/134 (66.42%), Postives = 94/134 (70.15%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXXQGLMV 403
            EGIVPGGGA LVHLS  +PAIK+  EDAD RLGADIVQKALVA  SLIA NA             SEW  GYNAMTD YEN+L+AGVIDPAKVTRCALQNAASVAGMVLTTQAI               +GLMV
Sbjct:  451 EGIVPGGGATLVHLSTVIPAIKETFEDADVRLGADIVQKALVAQ-SLIAQNAGIEGEVVVEKIMFSEWELGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 583          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.060e-33
Identity = 73/100 (73.00%), Postives = 79/100 (79.00%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQN 301
            EGIVPGGGAALVHLS  VPAI  + +DADERLGADI+QKALVAPASLIA NA            A EW  GYNAMTDKYEN+++AGVIDPAKVTRCALQN
Sbjct:  396 EGIVPGGGAALVHLSTVVPAINGEDKDADERLGADILQKALVAPASLIAQNAGIEGEVVVEKVKAREWEIGYNAMTDKYENLVEAGVIDPAKVTRCALQN 495          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.750e-30
Identity = 68/114 (59.65%), Postives = 81/114 (71.05%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIVPGGGAAL+HLS+ VPA K+ L DA+E+LGADIV K+L AP  LIA NA               +  GYNAM DK EN+L AGVIDPAKVTR  L N+ S+AG++LTTQA+
Sbjct:  442 EGIVPGGGAALLHLSELVPAFKETLTDAEEKLGADIVMKSLRAPCRLIADNAGVEGEVIVQRLLGKPFEVGYNAMIDKVENLLDAGVIDPAKVTRNGLLNSVSIAGIMLTTQAV 555          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.434e-26
Identity = 55/114 (48.25%), Postives = 81/114 (71.05%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIVPGGG  L+HLS  V  +K  L + +E++GADIV++AL AP + IA+N+            +++++ GYN +T +YE+++ AG++DPA V R ALQNA S+AGMVLTT+A+
Sbjct:  407 EGIVPGGGTTLIHLSTKVEELKGSLNNEEEKIGADIVRRALEAPLNQIANNSGVEGSVIVEKVRSTDFSVGYNVITGEYEDLIAAGILDPAMVVRSALQNAGSIAGMVLTTEAV 520          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.211e-25
Identity = 59/114 (51.75%), Postives = 81/114 (71.05%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIVPGGG  L+HL+  + ++K +L+D +E++GAD+V  AL AP + IA NA             ++++ GYNAMTD YE+M+ AGV+DPAKV R  LQNA S+AGMVLTT+A+
Sbjct:  407 EGIVPGGGTTLIHLTKTIESVKAQLKD-EEKVGADLVGIALEAPLTQIADNAGKEGAVVVEKVRDADFSYGYNAMTDTYEDMIAAGVVDPAKVVRSGLQNAGSIAGMVLTTEAL 519          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 3.522e-25
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIVPGGG  L++L+  V  IK    D +E++GADIV++AL AP   IA NA             S++ TGYNA T ++E+++ AG+IDPAKV R ALQNAAS+AG+VLTT+AI
Sbjct:  407 EGIVPGGGKTLIYLASKVDEIKKNF-DEEEKIGADIVKRALEAPLRQIADNAGVEGSVIVSRVKDSDFNTGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAI 519          
The following BLAST results are available for this feature:
BLAST of CX300491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUB1_BRANA2.196e-4370.15RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_PEA3.171e-4267.16RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_ARATH5.981e-4165.67RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_WHEAT7.811e-4173.68RuBisCO large subunit-binding protein subunit alph... [more]
RUB2_BRANA1.247e-3866.42RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_RICCO2.060e-3373.00RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_CHLRE4.750e-3059.65RuBisCO large subunit-binding protein subunit alph... [more]
CH601_TRIEI5.434e-2648.2560 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH601_ACAM11.211e-2551.7560 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH602_ANAVT3.522e-2552.6360 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]

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Properties
Property NameValue
Genbank descriptionC07010G10SK SaltLeaf1 Citrus clementina cDNA clone C07010G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300491 ID=CX300491; Name=CX300491; organism=Citrus clementina; type=EST; length=537bp
GGAAGGTATTGTTCCTGGTGGTGGTGCTGCTCTGGTTCATCTGTCTGATC
ATGTTCCTGCTATCAAGGACAAGCTTGAAGATGCAGATGAGCGATTAGGT
GCTGACATTGTGCAGAAGGCACTGGTAGCACCTGCATCACTGATAGCTCA
CAATGCTGGAGTTGAAGGTGAGGTTGTTGTGGAGAAGGTGAAAGCTAGTG
AATGGACGACTGGTTACAATGCAATGACAGACAAGTATGAGAACATGCTT
CAGGCTGGAGTTATTGATCCTGCAAAGGTGACAAGATGTGCATTGCAGAA
TGCGGCTTCAGTTGCAGGAATGGTCCTGACCACTCAGGCTATTGTCGTGG
AGAAGCCAAAGCCCAAAACTCCGGTAGCCGCTCCGCCACAAGGTCTTATG
GTGTAATCTCTAGGACTCTCCAGATTTAGTTAGGAGGTTTATAGATGAAA
GAGTGGTTTTATTGCGGTGAACTGAAAAGACAAGTTTTACTTAATTGATA
TAAAATCGTGTCTTTTTTGTAAAAAAAAAAAAAAAAA
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