CX300540

Overview
NameCX300540
Unique NameCX300540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300540 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.649e-21
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    7 SDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCT 195
            SDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCT
Sbjct:    2 SDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCT 62          
BLAST of CX300540 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.031e-17
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   13 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNC 192
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDC 61          
BLAST of CX300540 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.031e-17
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    7 SDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCT 195
            SD CGNCDCAD SQCVKKG+S   D VETD S++   VVM V AAE+ G CKCG +C CVNCT
Sbjct:    2 SDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIED-VVMGVPAAESGGKCKCGTSCPCVNCT 61          
BLAST of CX300540 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.321e-15
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    7 SDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNC 192
            S  C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C
Sbjct:    2 SSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDC 62          
BLAST of CX300540 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.097e-14
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    7 SDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCT 195
            S  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CT
Sbjct:    2 SGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCT 63          
BLAST of CX300540 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.192e-13
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    7 SDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNC 192
            SD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C
Sbjct:    2 SDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDC 58          
BLAST of CX300540 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.192e-13
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    7 SDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNC 192
            SD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C
Sbjct:    2 SDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDC 58          
BLAST of CX300540 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.486e-11
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    7 SDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNC 192
            SD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C
Sbjct:    2 SDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGC 61          
BLAST of CX300540 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    7 SDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNC 192
            SD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C
Sbjct:    2 SDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGC 61          
The following BLAST results are available for this feature:
BLAST of CX300540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA2.649e-2168.25Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC3.031e-1761.67Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE3.031e-1766.67Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV6.321e-1558.06Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO4.097e-1457.14Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ1.192e-1353.23Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.192e-1353.23Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ2.486e-1148.39Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI9.445e-1146.77Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionC07011D10SK SaltLeaf1 Citrus clementina cDNA clone C07011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300540 ID=CX300540; Name=CX300540; organism=Citrus clementina; type=EST; length=501bp
AACACGTCGGACACCTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTG
TGTGAAGAAGGGAAGCAGCTACGCTGCTGACTTCGTCGAGACTGACTTGA
GCTTTGTCAGCACCGTTGTTGTCATGGACGTTCAGGCTGCTGAGGCTGAA
GGTAACTGCAAGTGCGGCCCCACCTGCGCTTGTGTGAACTGCACTTTGTG
GTAGTCACTAATAAGCAAACACATGCAGCAAAAAAAAAGAAGCTGCAAGT
GTGCCTAAATATTGTGGGGGTTAAGAAAAATGTAAGGGTGATTAAAAAAA
AAAAGAAAAATTCTCTACTTCGTTTTTATGATGGTCTACTACTAGTGTGT
GGAGTGATGTGCGTGTTGTGTCACCCATCACTCGTAATGTTTTGTGTTTC
CTTCTTCATAATCATGTAATATATGGCCATGGCCATGACCGTGGCCTTGT
GTGGTTTAATTTTAATGTATTATTGTTAGTCTACAAAAAAAAAAAAAAAA
A
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