CX300556
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2) HSP 1 Score: 176.407 bits (446), Expect = 5.735e-44 Identity = 90/130 (69.23%), Postives = 98/130 (75.38%), Query Frame = 3 Query: 3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQS 392 RKAHFTA S RR++MS+PLSTDLRQKYNVRSMP+RKDDEVQ+VRGTYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKVVIT TKFT ED+MQ+ Sbjct: 15 RKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGRAAADKEKGTKFTSEDVMQN 144
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 1.562e-41 Identity = 85/130 (65.38%), Postives = 97/130 (74.62%), Query Frame = 3 Query: 3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQS 392 RKAHFTAPS VRR+LMS+PLS DLR K+NVRSMP+RKDDEVQVVRGT+KGREGKV+QVYRRKWVIHIERITREKVNGSTVNVG+N S V+IT TKF+ ED+M++ Sbjct: 15 RKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGRAAADKEKGTKFSAEDVMEN 144
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL26_BRARA (60S ribosomal protein L26 OS=Brassica rapa GN=RPL26 PE=2 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 1.238e-38 Identity = 81/130 (62.31%), Postives = 92/130 (70.77%), Query Frame = 3 Query: 3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQS 392 RK HFTA S RR+ MS+PLSTDLRQKYNVRSMP+RKDDE Q+VRGTYKGREGK+ QVYRRK VIHIER+TREKVNG+TVNVG+ P+KVVIT TKFT D+MQ+ Sbjct: 15 RKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRGTYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLERKAKGRAAADKDKGTKFTAVDVMQN 144
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL26L_HUMAN (60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 1.199e-33 Identity = 71/93 (76.34%), Postives = 84/93 (90.32%), Query Frame = 3 Query: 3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 278 RK HF APS VRR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT Sbjct: 15 RKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL26_MOUSE (60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.565e-33 Identity = 70/93 (75.27%), Postives = 84/93 (90.32%), Query Frame = 3 Query: 3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 278 RK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT Sbjct: 15 RKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL26_MACFA (60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.565e-33 Identity = 70/93 (75.27%), Postives = 84/93 (90.32%), Query Frame = 3 Query: 3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 278 RK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT Sbjct: 15 RKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL26_HUMAN (60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.565e-33 Identity = 70/93 (75.27%), Postives = 84/93 (90.32%), Query Frame = 3 Query: 3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 278 RK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT Sbjct: 15 RKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.565e-33 Identity = 70/93 (75.27%), Postives = 84/93 (90.32%), Query Frame = 3 Query: 3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 278 RK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT Sbjct: 15 RKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL26_RAT (60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 2.045e-33 Identity = 70/93 (75.27%), Postives = 83/93 (89.25%), Query Frame = 3 Query: 3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 278 RK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI PSKVVIT Sbjct: 15 RKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVIT 107
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL26_AILME (60S ribosomal protein L26 OS=Ailuropoda melanoleuca GN=RPL26 PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 7.769e-33 Identity = 69/93 (74.19%), Postives = 83/93 (89.25%), Query Frame = 3 Query: 3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 278 RK HF APS +RR +S+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT Sbjct: 15 RKRHFNAPSHIRRKTLSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107 The following BLAST results are available for this feature:
BLAST of CX300556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 52
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300556 ID=CX300556; Name=CX300556; organism=Citrus clementina; type=EST; length=481bpback to top |