CX300556

Overview
NameCX300556
Unique NameCX300556
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12304 contig Ccv1_Contig12304:85..565. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 5.735e-44
Identity = 90/130 (69.23%), Postives = 98/130 (75.38%), Query Frame = 3
Query:    3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQS 392
            RKAHFTA S  RR++MS+PLSTDLRQKYNVRSMP+RKDDEVQ+VRGTYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKVVIT                           TKFT ED+MQ+
Sbjct:   15 RKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGRAAADKEKGTKFTSEDVMQN 144          
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.562e-41
Identity = 85/130 (65.38%), Postives = 97/130 (74.62%), Query Frame = 3
Query:    3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQS 392
            RKAHFTAPS VRR+LMS+PLS DLR K+NVRSMP+RKDDEVQVVRGT+KGREGKV+QVYRRKWVIHIERITREKVNGSTVNVG+N S V+IT                           TKF+ ED+M++
Sbjct:   15 RKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGRAAADKEKGTKFSAEDVMEN 144          
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL26_BRARA (60S ribosomal protein L26 OS=Brassica rapa GN=RPL26 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.238e-38
Identity = 81/130 (62.31%), Postives = 92/130 (70.77%), Query Frame = 3
Query:    3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQS 392
            RK HFTA S  RR+ MS+PLSTDLRQKYNVRSMP+RKDDE Q+VRGTYKGREGK+ QVYRRK VIHIER+TREKVNG+TVNVG+ P+KVVIT                           TKFT  D+MQ+
Sbjct:   15 RKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRGTYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLERKAKGRAAADKDKGTKFTAVDVMQN 144          
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL26L_HUMAN (60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.199e-33
Identity = 71/93 (76.34%), Postives = 84/93 (90.32%), Query Frame = 3
Query:    3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 278
            RK HF APS VRR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   15 RKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL26_MOUSE (60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.565e-33
Identity = 70/93 (75.27%), Postives = 84/93 (90.32%), Query Frame = 3
Query:    3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 278
            RK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   15 RKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL26_MACFA (60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.565e-33
Identity = 70/93 (75.27%), Postives = 84/93 (90.32%), Query Frame = 3
Query:    3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 278
            RK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   15 RKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL26_HUMAN (60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.565e-33
Identity = 70/93 (75.27%), Postives = 84/93 (90.32%), Query Frame = 3
Query:    3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 278
            RK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   15 RKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.565e-33
Identity = 70/93 (75.27%), Postives = 84/93 (90.32%), Query Frame = 3
Query:    3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 278
            RK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   15 RKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL26_RAT (60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.045e-33
Identity = 70/93 (75.27%), Postives = 83/93 (89.25%), Query Frame = 3
Query:    3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 278
            RK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI PSKVVIT
Sbjct:   15 RKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVIT 107          
BLAST of CX300556 vs. ExPASy Swiss-Prot
Match: RL26_AILME (60S ribosomal protein L26 OS=Ailuropoda melanoleuca GN=RPL26 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.769e-33
Identity = 69/93 (74.19%), Postives = 83/93 (89.25%), Query Frame = 3
Query:    3 RKAHFTAPSIVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 278
            RK HF APS +RR  +S+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   15 RKRHFNAPSHIRRKTLSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
The following BLAST results are available for this feature:
BLAST of CX300556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
RL261_ARATH5.735e-4469.2360S ribosomal protein L26-1 OS=Arabidopsis thalian... [more]
RL262_ARATH1.562e-4165.3860S ribosomal protein L26-2 OS=Arabidopsis thalian... [more]
RL26_BRARA1.238e-3862.3160S ribosomal protein L26 OS=Brassica rapa GN=RPL2... [more]
RL26L_HUMAN1.199e-3376.3460S ribosomal protein L26-like 1 OS=Homo sapiens G... [more]
RL26_MOUSE1.565e-3375.2760S ribosomal protein L26 OS=Mus musculus GN=Rpl26... [more]
RL26_MACFA1.565e-3375.2760S ribosomal protein L26 OS=Macaca fascicularis G... [more]
RL26_HUMAN1.565e-3375.2760S ribosomal protein L26 OS=Homo sapiens GN=RPL26... [more]
RL26_BOVIN1.565e-3375.2760S ribosomal protein L26 OS=Bos taurus GN=RPL26 P... [more]
RL26_RAT2.045e-3375.2760S ribosomal protein L26 OS=Rattus norvegicus GN=... [more]
RL26_AILME7.769e-3374.1960S ribosomal protein L26 OS=Ailuropoda melanoleuc... [more]

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Properties
Property NameValue
Genbank descriptionC07011F05SK SaltLeaf1 Citrus clementina cDNA clone C07011F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300556 ID=CX300556; Name=CX300556; organism=Citrus clementina; type=EST; length=481bp
ACCGGAAGGCGCACTTCACCGCCCCTTCCATCGTGCGCCGCATCTTGATG
AGCGCGCCGCTGTCCACTGACCTCCGTCAGAAGTACAACGTAAGGTCGAT
GCCTGTGCGCAAGGACGACGAGGTCCAGGTTGTCCGTGGGACCTACAAGG
GGCGCGAGGGCAAAGTCGTTCAAGTGTATCGCCGGAAGTGGGTCATTCAC
ATCGAGCGCATCACTCGCGAGAAGGTTAATGGATCCACTGTGAATGTGGG
AATCAACCCATCAAAGGTCGTGATCACCAAGCTCCGTCTGGACAAGGACA
GGAAGTCTTTGCTCGATCGCAAGGCCAAGGGACGTGCCGCCGCTGACAAG
GAGAAGGGTACCAAGTTCACCCCAGAGGATATTATGCAGAGTGTTGACTA
ATTTTTATAAGAGGTTGTTTTTAAAGTTTTTGTTTAATCATAGATTTTAT
GGATTTAGGATGTTTTGTTTTGGCAATGTCA
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