CX300663

Overview
NameCX300663
Unique NameCX300663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:431..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300663 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.555e-48
Identity = 88/161 (54.66%), Postives = 110/161 (68.32%), Query Frame = 1
Query:    1 CFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 471
            C+  E++PPS YC  + NYPC  GK Y+GRGP+QL+WNYNY +C                 ++DP +SFKSA WFWMT Q PKPSCH VI   W PS++D  AGR+PGYG+ TNIINGG+ECG+GWN  V +RIGF+  +C   G+  G NLDCY+Q PFG
Sbjct:  158 CYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLL--SSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFG 316          
BLAST of CX300663 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.064e-48
Identity = 90/161 (55.90%), Postives = 111/161 (68.94%), Query Frame = 1
Query:    1 CFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 471
            CF+ E +P S YC  +  YPC  GK YYGRGP+QL+WNYNY  C                 ATD VLSFK+A+WFWMT Q PKPSCH+V+T  W+PSA D  AGRLPGYG+ TN++NGG+ECG+G N  V +R+GFF  +CG  G+  G NLDCY+Q+PFG
Sbjct:   85 CFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLV--ATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of CX300663 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 5.134e-47
Identity = 87/161 (54.04%), Postives = 108/161 (67.08%), Query Frame = 1
Query:    1 CFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 471
            C+  E++PPS YC  + NYPC  GK Y+GRGP+QL+WNYNY +C                 ++DP +SFKSA WFWMT Q PKPSCH VI   W PS++D  AGR  GYG+ TNIINGG+ECG+GWN  V +RIGF+  +C   G+  G NLDCY+Q PFG
Sbjct:  136 CYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLL--SSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFG 294          
BLAST of CX300663 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.494e-46
Identity = 91/169 (53.85%), Postives = 113/169 (66.86%), Query Frame = 1
Query:    1 CFISEISPPSPYCNLN--YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 495
            CF+ E +P S YC  +  +PC    +YYGRGPIQ++WNYNY +C                 ATDPV+SFK+A+WFWMT Q PKPSCH+VIT  W PS+ D  AGRLPGYG  TNIINGG+ECG+G +  V++RIGF+  +C  FGI  G NLDCY Q+PFG  L   S+
Sbjct:  151 CFLREQNP-STYCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLV--ATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316          
BLAST of CX300663 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 7.413e-46
Identity = 86/160 (53.75%), Postives = 107/160 (66.88%), Query Frame = 1
Query:    1 CFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 468
            CF  E +P S YC  +  +PC    +YYGRGP+QL+WNYNY  C                 A D V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  AGRLPGYG+ TNIINGG+ECG+G +  V +RIGF+  +C  FG+ PG NLDCY+Q+ F
Sbjct:  169 CFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLV--ANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of CX300663 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.264e-45
Identity = 87/160 (54.37%), Postives = 107/160 (66.88%), Query Frame = 1
Query:    1 CFISEISPPSPYCNL--NYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 468
            C+  E++P + YC    NYPC  GK Y+GRGP+QLTWNYNY +C                 ATDP +SFKSA WFWMT Q PKPSCH+VI   W PS +D  AGR+PG+GL TNIINGG+ECGQGWN  V +RIGF+  +C   G+  G NLDCY+Q+ +
Sbjct:  156 CYNRELNP-ADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLL--ATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSY 312          
BLAST of CX300663 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.679e-45
Identity = 90/172 (52.33%), Postives = 112/172 (65.12%), Query Frame = 1
Query:    1 CFISEISPPSPYCNLN--YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM*SS 504
            CF+ E +P S YC+    +PC    +YYGRGPIQ++WNYNY +C                 ATD V+SFKSA+WFWMTAQ PKPS H+VIT  W PS+ DV A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G NLDCY Q PFG  L+   + +S
Sbjct:  159 CFVRERNP-STYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLV--ATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of CX300663 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.275e-45
Identity = 88/161 (54.66%), Postives = 107/161 (66.46%), Query Frame = 1
Query:    1 CFISEISPPSPYCNLN--YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 471
            CF+ E +P S YC+    +PC    +YYGRGPIQ++WNYNY +C                 ATD V+SFKSA+WFWMTAQ PKPS H+VIT  W PS+ DV A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G NLDCY Q PFG
Sbjct:  158 CFVRERNP-SAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLV--ATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFG 315          
BLAST of CX300663 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.068e-44
Identity = 87/166 (52.41%), Postives = 108/166 (65.06%), Query Frame = 1
Query:    1 CFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMA 486
            CF  EI   + YC  +  +PC    KY+GRGPIQL++NYNY                    A+DPV+SFK+A+WFWMT Q PKPSCH+VIT +W PS+ D+ AGR+PGYG+ TNIINGG+ECG G +D V NRIGF+  +C   GI  G NLDCY Q+PF   L A
Sbjct:  169 CFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNY--GPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of CX300663 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.938e-44
Identity = 82/163 (50.31%), Postives = 106/163 (65.03%), Query Frame = 1
Query:    1 CFISEISPPSPYCN--LNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLI 477
            CF  E +P S YC+    +PC     YYGRGP+QL+WNYNY +C                 + DPV++FK+AIWFWMT Q PKPSCH VI  +W+PS  D  AGR+PGYG+ TNIINGG+ECG+G +  V +RIGF+  +C   G+ PG NLDCY+Q+ F  +
Sbjct:  154 CFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLV--SNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQRSFASV 314          
The following BLAST results are available for this feature:
BLAST of CX300663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI1_GOSHI3.555e-4854.66Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIT_CARPA6.064e-4855.90Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_GOSHI5.134e-4754.04Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI2_PEA1.494e-4653.85Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIB_ARATH7.413e-4653.75Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI1_THECC1.264e-4554.38Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIT_PHAVU3.679e-4552.33Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU6.275e-4554.66Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI9_ORYSJ4.068e-4452.41Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_BRANA6.938e-4450.31Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC07012G12SK SaltLeaf1 Citrus clementina cDNA clone C07012G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300663 ID=CX300663; Name=CX300663; organism=Citrus clementina; type=EST; length=670bp
TGCTTTATAAGCGAAATTAGCCCTCCGTCCCCCTACTGTAATCTTAACTA
TCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTGGA
ATTACAATTACTTACGGTGCGGAGAAGACCTAGGGCTAGGAGAGGAGTTG
TTGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTC
AGCAATCTGGTTCTGGATGACCGCACAGCCACCAAAGCCATCATGCCACG
AAGTCATTACCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGC
CGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGA
ATGTGGCCAAGGTTGGAATGACGCTGTACGTAACCGTATTGGGTTCTTTA
GCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTTACAATCTTGATTGC
TACCACCAACAGCCTTTTGGCCTTATTCTGATGGCACGATCTATGTGATC
ATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAA
AAACTTTAGATGTCACACTTGTAGGTGGACAACTAAGTTGTTACGCTCTT
ATTGTAAATAAATTAAATAAGACTGATCCAACATGGATCAATGAGTCTTC
TCCAAAAAAAAAAAAAAAAA
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