CX305130

Overview
NameCX305130
Unique NameCX305130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length415
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig850 contig Ccv1_Contig850:1..415. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX305130 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.307e-18
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 2 
Query:    8 GKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSPMPSRSFKLPNPMYYI 163
            GK A  YKSE+RN MV+EG+RI+GNSGDQWSDLLGS M  RSFKLPNPMYYI
Sbjct:  203 GKTATTYKSERRNAMVEEGFRIVGNSGDQWSDLLGSSMSYRSFKLPNPMYYI 254
[Close]
BLAST of CX305130 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.505e-11
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 2 
Query:   20 IIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSPMPSRSFKLPNPMYYIP 166
            ++YKS+ RN +V++GY I+GN GDQW+DL+    P R FKLPNP+YY+P
Sbjct:  222 VVYKSKVRNSLVKKGYNIVGNIGDQWADLV-EDTPGRVFKLPNPLYYVP 269
[Close]
BLAST of CX305130 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.468e-11
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 2 
Query:   20 IIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSPMPSRSFKLPNPMYYIP 166
            ++YKS+ R  +V++GY I+GN GDQW+DL+    P R FKLPNP+YY+P
Sbjct:  217 VVYKSKVRKSLVKKGYNIVGNIGDQWADLV-EDTPGRVFKLPNPLYYVP 264
The following BLAST results are available for this feature:
BLAST of CX305130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PPA1_SOLLC6.307e-1878.85Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSP1_ARATH1.505e-1157.14Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
VSP2_ARATH7.468e-1155.10Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC18001E03Rv Drought1 Citrus clementina cDNA clone C18001E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305130 ID=CX305130; Name=CX305130; organism=Citrus clementina; type=EST; length=415bp
GCGGGATGGGAAACTGGCGATAATTTACAAATCGGAGAAGAGAAACGAGA
TGGTACAAGAGGGATACCGGATTCTGGGAAACTCTGGGGACCAATGGAGC
GATCTATTGGGTTCTCCCATGCCCAGTCGCTCTTTCAAGCTTCCAAATCC
CATGTATTACATCCCTTGATTGGCGCAAATTGTTAATTTTTTCAATAAAA
CAAACAGGACCTTGTTCTTGTAACCTGAAATTGTATAGGCATTAAAAACG
CAAATGTTAATTGAACACAGTAAATTTATGGTGCCAACACAAATGTTTGC
AATGTGTTGTTGCTACCAACCAAACGTGAATCAAAATGTACAACAGCTGT
ATAAAGCGAGAATAAAGCAGCATATTTCTGTTGTCAAATTGTTAAAAAAA
AAAAAAAAAAAAAAA
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