CX305153

Overview
NameCX305153
Unique NameCX305153
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10111 contig Ccv1_Contig10111:699..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305153 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.715e-20
Identity = 55/167 (32.93%), Postives = 92/167 (55.09%), Query Frame = 2
Query:   44 MKTLLATILSFLILALASCPLLVLDTSSVPEPLLDVNGNKVESTLQYHIVSAIWXXXXXXXXXXXXXXXYCPLDVIQLPSAIQWERKLILSPYDNST-IVRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLPG 541
            MKT  A +L  L+ A  S        ++   P+LD +G+++++ +QY+++S+I                 CP  V+Q  S +     +I S  D+   +VR STD+N+ FV +    + C+   +W++DNYD S+G+W++TT G+ G PG  TL +WFK+EK  + G
Sbjct:    1 MKTATAVVL--LLFAFTSKSYFFGVANAANSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPIRD--RLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG 163          
BLAST of CX305153 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 5.660e-18
Identity = 58/175 (33.14%), Postives = 88/175 (50.29%), Query Frame = 2
Query:   44 MKTLLATILSFL----ILALASCPLLVLDTSSVPEPLLDVNGNKVESTLQYHIVSAI--WXXXXXXXXXXXXXXXYCPLDVIQLPSAIQWERKLILSPYD-NSTIVRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAY 547
            MK L    LSF     +LA A+ PLL     S P P+LD++G K+ +   Y+IV  +                   CP  V+Q    +  +R L   P +    +VR STDLN+ F   +    +     +W++D YD S+G++F+T GG+ G+PG ET+ +WFK+E+    G Y
Sbjct:    1 MKELTMLSLSFFFVSALLAAAANPLLSA-ADSAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPC--RWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGFY 172          
BLAST of CX305153 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.352e-13
Identity = 49/142 (34.51%), Postives = 70/142 (49.30%), Query Frame = 2
Query:  131 PEPLLDVNGNKVESTLQYHIVSAIWXXXXXXXXXXXXXXXY-CPLDVIQLPSAIQWERKLILSPYDN--STIVRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAY 547
            P+P++D++G  V   + Y +VSAIW                 CPL V+Q P        +I S   N    IV ES DLN++F   ++    CNE   WKVD +    G W +T GG  G+ G E+  + FK++K  LP +Y
Sbjct:    3 PKPIVDIDGKPVLYGVDYFVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQDP--FDNGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAGLPFSY 137          
The following BLAST results are available for this feature:
BLAST of CX305153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC2.715e-2032.9321 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU5.660e-1833.14Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA9.352e-1334.51Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC18001G09Rv Drought1 Citrus clementina cDNA clone C18001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305153 ID=CX305153; Name=CX305153; organism=Citrus clementina; type=EST; length=548bp
GCGGGGACGCATCAAACAGATATCATAGCTTTGAAATAACAAAATGAAGA
CTTTATTAGCAACAATACTCTCCTTCCTCATCCTTGCCTTGGCCTCATGC
CCTCTATTGGTCTTGGACACCTCATCAGTTCCTGAACCTCTCCTTGATGT
CAATGGCAACAAGGTTGAATCCACTCTTCAGTACCATATAGTCTCAGCCA
TCTGGGGAGCTGGCGGCGGTGGAGTTAGCCTACACGGAGGCAGAAACGGA
TACTGTCCGTTGGATGTTATCCAATTACCTTCTGCTATCCAATGGGAAAG
GAAATTAATACTGTCACCATATGACAATTCTACAATTGTCAGAGAATCCA
CTGATCTCAACTTGAGATTCGTAGGGTTACTATCTGGAAGTAAGCAATGT
AACGAGCTACCGTTGTGGAAAGTTGATAACTATGACGCTTCATCAGGCAG
ATGGTTTATAACAACCGGGGGACTTGATGGTCACCCTGGAGCTGAAACGT
TGCTAAACTGGTTTAAGCTTGAGAAAACTAATCTACCAGGTGCATACA
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