CX305194

Overview
NameCX305194
Unique NameCX305194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14738 contig Ccv1_Contig14738:133..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.417e-33
Identity = 69/102 (67.65%), Postives = 80/102 (78.43%), Query Frame = -3
Query:  212 YDPFADIK-DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFAD   +    G K YVH+RVQQRNG+K LTTVQGLK+++ Y KILKDLKKEFCCNG VV D  LG+VIQLQGD RKNV  FLV++ +V KD IKIHGF
Sbjct:   12 FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.851e-33
Identity = 69/102 (67.65%), Postives = 80/102 (78.43%), Query Frame = -3
Query:  212 YDPFADIK-DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFAD   +    G K YVH+RVQQRNG+K LTTVQGLK+++ Y KILKDLKKEFCCNG VV D  LG+VIQLQGD RKNV  FLV++ +V KD IKIHGF
Sbjct:   12 FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.124e-33
Identity = 69/102 (67.65%), Postives = 80/102 (78.43%), Query Frame = -3
Query:  212 YDPFADIK-DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFA+   +    G K YVH+RVQQRNG+K LTTVQGLK+D+ Y KILKDLKKEFCCNG VV D  LG+VIQLQGD RKNV  FLV++ IV K+ IKIHGF
Sbjct:   12 FDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.386e-33
Identity = 69/104 (66.35%), Postives = 80/104 (76.92%), Query Frame = -3
Query:  212 YDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFA+        A G K YVH+R+QQRNG+K LTTVQGLK++F Y KILKDLKKEFCCNG VV D  LG+VIQLQGD RKNV  FLV++ IV K+ IKIHGF
Sbjct:   12 FDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.386e-33
Identity = 69/104 (66.35%), Postives = 80/104 (76.92%), Query Frame = -3
Query:  212 YDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFA+        A G K YVH+R+QQRNG+K LTTVQGLK++F Y KILKDLKKEFCCNG VV D  LG+VIQLQGD RKNV  FLV++ IV K+ IKIHGF
Sbjct:   12 FDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.386e-33
Identity = 69/104 (66.35%), Postives = 80/104 (76.92%), Query Frame = -3
Query:  212 YDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFA+        A G K YVH+R+QQRNG+K LTTVQGLK++F Y KILKDLKKEFCCNG VV D  LG+VIQLQGD RKNV  FLV++ IV K+ IKIHGF
Sbjct:   12 FDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 9.188e-33
Identity = 68/102 (66.67%), Postives = 80/102 (78.43%), Query Frame = -3
Query:  212 YDPFADIK-DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFAD   +    G K YVH+RVQQRNG+K LTTVQGLK+++ Y KILKDLKKEFCCNG VV D  LG+VIQLQGD RKNV  FLV++ +V KD I+IHGF
Sbjct:   12 FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.200e-32
Identity = 68/104 (65.38%), Postives = 80/104 (76.92%), Query Frame = -3
Query:  212 YDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPF++        A G K YVH+R+QQRNG+K LTTVQGLK++F Y KILKDLKKEFCCNG VV D  LG+VIQLQGD RKNV  FLV++ IV K+ IKIHGF
Sbjct:   12 FDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.673e-32
Identity = 67/102 (65.69%), Postives = 81/102 (79.41%), Query Frame = -3
Query:  212 YDPFADIKDSLAPGD-KGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFA+ + + A G  K YVH+R+QQRNG+K LTTVQGLK++  Y KILKDLKK  CCNG VVNDK LGKVIQLQGD RKNV  F+V++ IV KD+IK+H F
Sbjct:   12 FDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKILKDLKKALCCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: EIF1_PONAB (Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.399e-25
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = -3
Query:  212 YDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FLV+  +   D++K+HGF
Sbjct:   10 FDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
The following BLAST results are available for this feature:
BLAST of CX305194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SUI12_ARATH1.417e-3367.65Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI11_ARATH1.851e-3367.65Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI1_SALBA4.124e-3367.65Protein translation factor SUI1 homolog OS=Salix b... [more]
SUI1_ORYSJ5.386e-3366.35Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI5.386e-3366.35Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_MAIZE5.386e-3366.35Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI1_BRAOL9.188e-3366.67Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI1_SPOST1.200e-3265.38Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_PIMBR2.673e-3265.69Protein translation factor SUI1 homolog OS=Pimpine... [more]
EIF1_PONAB5.399e-2550.00Eukaryotic translation initiation factor 1 OS=Pong... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18002D03Rv Drought1 Citrus clementina cDNA clone C18002D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305194 ID=CX305194; Name=CX305194; organism=Citrus clementina; type=EST; length=516bp
GACTTTNTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAATATCCATAACTT
TTATTATCATTATCCATAACTTGAGAACAGAAAATCTTAAATCCAAGTCC
AGAGAAATACAGAAAACCTCAACAAGAACAGACTACAGATATGCTCTGCA
GATCACATAAGACCACATATATTATACCATAACCATATGTATTAATCACC
ACATTTGCTTAGAAACCATGAATCTTGATACGATCCTTGTCCACAATCTT
ACTCTTAACGAGAAAGATCATAACATTCTTCCGATGATCACCTTGAAGCT
GAATCACCTTCCCGAGAACTTTGTCATTGACAACATTCCCGTTACAACAG
AACTCCTTTTTGAGGTCCTTGAGGATCTTCTGGTAGCCAAAATCCTCTTT
AAGTCCTTGAACAGTTGTTAAGCACTTCTTTCCATTCCTCTGCTGTACGC
GGAGATGCACGTACCCTTTGTCACCTGGGGCAAGGGAGTCCTTTATATCA
GCAAAGGGATCATAGG
back to top