CX305206

Overview
NameCX305206
Unique NameCX305206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.004e-38
Identity = 81/97 (83.51%), Postives = 88/97 (90.72%), Query Frame = -3
Query:  156 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKVDRPADEPMPEAPTEVIGA 446
            RRKMR+IMV QA +CDLK LV+KFI E  GREIEKATSSIYPLQNVFIRKVKILKAPKFD+GKLMEVHGDYSE+VGVK+DRPA+E  PEA TEVIGA
Sbjct:  165 RRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPAEEAAPEA-TEVIGA 260          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.814e-38
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = -3
Query:  156 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKVDRPADEPMPEAPTEVIGA 446
            RRKMR+IM   A SCDLK LV+KFI E  GREIEKATSSIYPLQNV+IRKVKILKAPKFDLGKLMEVHGDYSE+VG K++RPADEP+ E  TEVIGA
Sbjct:  165 RRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKLERPADEPVAEGVTEVIGA 261          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 1.449e-37
Identity = 79/98 (80.61%), Postives = 85/98 (86.73%), Query Frame = -3
Query:  156 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SENVGVKVDRPADEPMPEAPTEVIGA 446
            RRKM +IMV +A+SCDLK LV KFI E  GREIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY +E+VGVKVDRPADE M E PTE+IGA
Sbjct:  165 RRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 262          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A1_ARATH (40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 3.228e-37
Identity = 79/98 (80.61%), Postives = 84/98 (85.71%), Query Frame = -3
Query:  156 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADEPMPEAPTEVIGA 446
            RRKMR IMV +A+SCDLK LV KFI E  GREIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLM+VHGDYS E+VGVKVDRPADE   E PTE+IGA
Sbjct:  165 RRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDVGVKVDRPADEMAVEEPTEIIGA 262          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 7.192e-37
Identity = 75/97 (77.32%), Postives = 84/97 (86.60%), Query Frame = -3
Query:  156 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKVDRPADEPMPEAPTEVIGA 446
            RRKMR+IMV QA SCDLK LV KFI E+ G+EIEKATSSIYPLQNVFIRKVKILK+PKFDLGKLMEVHGDYSE+VG KV+ PADE + E   E++GA
Sbjct:  165 RRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSEDVGTKVESPADETVVEGTPEIVGA 261          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4)

HSP 1 Score: 150.984 bits (380), Expect = 2.093e-36
Identity = 79/98 (80.61%), Postives = 87/98 (88.78%), Query Frame = -3
Query:  156 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-NVGVKVDRPADEPMPEAPTEVIGA 446
            RRKMR+IMV QA SCDLK LV+KFI E  GREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY+E ++G K+DRPA+E + E PTEVIGA
Sbjct:  165 RRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDDIGTKLDRPAEEAVAE-PTEVIGA 261          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 7.952e-36
Identity = 75/97 (77.32%), Postives = 84/97 (86.60%), Query Frame = -3
Query:  156 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKVDRPADEPMPEAPTEVIGA 446
            RRKM +IM  QA+SCDLK LV KFI E  GREIEKATSSI+PLQNVFIRKVKILKAPKFD+GKLMEVHGDYSE+VGVK++RP +E M E  TEV+GA
Sbjct:  165 RRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLERPIEETMVEGETEVVGA 261          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.356e-35
Identity = 75/97 (77.32%), Postives = 84/97 (86.60%), Query Frame = -3
Query:  156 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKVDRPADEPMPEAPTEVIGA 446
            RRKM +IM  QA+SCDLK LV KFI E  GREIEKATSSI+PLQNV+IRKVKILKAPKFD+GKLMEVHGDYSE+VGVK+DRPADE + EA  E+ GA
Sbjct:  165 RRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPADETVAEAEPEIPGA 261          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 1.833e-32
Identity = 74/99 (74.75%), Postives = 84/99 (84.85%), Query Frame = -3
Query:  156 RRKMRQIMVAQ-AASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SENVGVKVDRPADEPMPEAPTEVIGA 446
            R KMR+IM+ + A+SCDLK LV KFI E  G++IEKAT  IYPLQNVFIRKVKILKAPKFDL KLMEVHGDY +E+VGVKVDRPADE + E PTE+IGA
Sbjct:  165 RSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRPADE-VVEEPTEIIGA 262          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 2.647e-31
Identity = 66/86 (76.74%), Postives = 77/86 (89.53%), Query Frame = -3
Query:  192 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADE 446
            RRKM +IM  QA+SCDLK LV KFI EV G+EIEKATSSI+PLQNVF+RKVKILKAPKFDLGKLMEVHGDY+ E++G K+DRPA++
Sbjct:  165 RRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAED 250          
The following BLAST results are available for this feature:
BLAST of CX305206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
RS3A_HELAN1.004e-3883.5140S ribosomal protein S3a OS=Helianthus annuus GN=... [more]
RS3A1_VITVI3.814e-3880.4140S ribosomal protein S3a-1 OS=Vitis vinifera GN=G... [more]
RS3A2_ARATH1.449e-3780.6140S ribosomal protein S3a-2 OS=Arabidopsis thalian... [more]
RS3A1_ARATH3.228e-3780.6140S ribosomal protein S3a-1 OS=Arabidopsis thalian... [more]
RS3A_CICAR7.192e-3777.3240S ribosomal protein S3a OS=Cicer arietinum PE=2 ... [more]
RS3A_CATRO2.093e-3680.6140S ribosomal protein S3a OS=Catharanthus roseus G... [more]
RS3A_DAUCA7.952e-3677.3240S ribosomal protein S3a OS=Daucus carota GN=cyc0... [more]
RS3A_TOBAC1.356e-3577.3240S ribosomal protein S3a OS=Nicotiana tabacum GN=... [more]
RS3A_BRARA1.833e-3274.7540S ribosomal protein S3a OS=Brassica rapa GN=RPS3... [more]
RS3A_ORYSJ2.647e-3176.7440S ribosomal protein S3a OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC18002E05Rv Drought1 Citrus clementina cDNA clone C18002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305206 ID=CX305206; Name=CX305206; organism=Citrus clementina; type=EST; length=448bp
CACTTTGTTTTTTTTTTTTTTTTTTCCAGCTAGAATATTTAAAATCTGCA
AACAACTTGAAACATTCATATATGATGAATTCATAACAAACAAAACTGCC
CAGATCAGAATAGTATTGAAAAACAAAACTAGAAAAATTTGTTCATTCAC
GTTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGCATGGGCTCATCAGC
TGGCCTATCCACCTTCACACCAACATTTTCCGAGTAATCACCGTGAACCT
CCATCAATTTTCCAAGATCAAACTTGGGAGCTTTCAGGATCTTCACTTTG
CGAATGAACACATTTTGTAAGGGGTATATGCTTGACGTTGCCTTCTCAAT
CTCTCTTCCAGTCACTTCAGCAATGAACTTTTCGACCAAGCTCTTAAGAT
CACAAGATGCTGCCTGAGCAACCATGATCTGCCTCATCTTGCGGCGAA
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