CX305211

Overview
NameCX305211
Unique NameCX305211
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length402
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO_DIOKA (1-aminocyclopropane-1-carboxylate oxidase OS=Diospyros kaki GN=DK-ACO1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.083e-25
Identity = 53/70 (75.71%), Postives = 60/70 (85.71%), Query Frame = -2
Query:  189 RMSLASFYNPASDPVIYPAPALLEKEAEKKPVYPKFVFEGYMKLYVPLKFQPKDPRFQAMKAVATNVNLG 398
            RMS+ASFYNP +D VIYPAPAL+EKE E+K VYPKFVF+ YMKLY  LKFQ K+PRF+AMKAV  NVNLG
Sbjct:  244 RMSIASFYNPGNDAVIYPAPALVEKEVEEKEVYPKFVFDDYMKLYAALKFQAKEPRFEAMKAVEANVNLG 313          
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.530e-24
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = -2
Query:  192 RMSLASFYNPASDPVIYPAPALLEKEAEKK-PVYPKFVFEGYMKLYVPLKFQPKDPRFQAMKAVATNVNL 398
            RMS+ASFYNP SD VIYPAP L+EKEAE+K  VYPKFVFE YMKLY  LKFQPK+PRF+AMKAV TN++L
Sbjct:  244 RMSIASFYNPGSDAVIYPAPTLVEKEAEEKNQVYPKFVFEDYMKLYAGLKFQPKEPRFEAMKAVETNISL 313          
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO1_PETHY (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.394e-23
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = -2
Query:  192 RMSLASFYNPASDPVIYPAPALLEKEAEK-KPVYPKFVFEGYMKLYVPLKFQPKDPRFQAMKAVATNVNL 398
            RMSLASFYNP SD VIYPAPAL+EKEAE+ K VYPKFVF+ YMKLY  LKFQ K+PRF+AMKA+ T+V +
Sbjct:  244 RMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEPRFEAMKAMETDVKM 313          
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.432e-22
Identity = 50/71 (70.42%), Postives = 61/71 (85.92%), Query Frame = -2
Query:  189 RMSLASFYNPASDPVIYPAPALLEKEAEKKPVYPKFVFEGYMKLYVPLKFQPKDPRFQAMKAV-ATNVNLG 398
            RMS+ASFYNP +D VIYPAPAL+E E EK  +YPKFVF+ YMKLYV LKFQ K+PRF+AMKA+ +TN+N+G
Sbjct:  245 RMSIASFYNPGNDAVIYPAPALVEGEQEKTKLYPKFVFDDYMKLYVGLKFQAKEPRFEAMKAMESTNLNMG 315          
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO1_CUCME (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.442e-22
Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = -2
Query:  189 GRMSLASFYNPASDPVIYPAPALLEKEA--EKKPVYPKFVFEGYMKLYVPLKFQPKDPRFQAMKAVATNVNLG 401
            GRMS+ASFYNP SD VIYPAPAL+EK+   EKK VYPKFVFE YMKLY+ +KFQ K+PRF+AMKA   N NLG
Sbjct:  244 GRMSIASFYNPGSDAVIYPAPALVEKDQDEEKKEVYPKFVFEDYMKLYLGVKFQAKEPRFEAMKA---NANLG 313          
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.441e-22
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = -2
Query:  189 RMSLASFYNPASDPVIYPAPALLEKEAEK-KPVYPKFVFEGYMKLYVPLKFQPKDPRFQAMKAVATNVNLG 398
            RMS+ASFYNP SD V+YPAPAL++KE ++ K VYPKFVFE YMKLY  LKFQ K+PRF+AMKA+   VNLG
Sbjct:  244 RMSIASFYNPGSDAVMYPAPALVDKEEDQQKQVYPKFVFEDYMKLYAGLKFQAKEPRFEAMKAMENAVNLG 314          
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO4_PETHY (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Petunia hybrida GN=ACO4 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.106e-22
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = -2
Query:  192 RMSLASFYNPASDPVIYPAPALLEKEAEK-KPVYPKFVFEGYMKLYVPLKFQPKDPRFQAMKAVATNVNL 398
            RMSLASFYNPASD VIYPAPAL+E++AE+ K +YPKFVF+ YMKLY  LKFQ K+PRF+AMKA+  +V +
Sbjct:  244 RMSLASFYNPASDAVIYPAPALVERDAEENKQIYPKFVFDDYMKLYARLKFQAKEPRFEAMKAMEADVKI 313          
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.068e-21
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = -2
Query:  192 RMSLASFYNPASDPVIYPAPALLEKEAEKKPVYPKFVFEGYMKLYVPLKFQPKDPRFQAMKAVATNVNL 398
            RMSLASFYNP +D VIYPAP+L+E   E K VYPKFVF+ YMKLY  LKFQPK+PRF+AMKA+  NV L
Sbjct:  244 RMSLASFYNPGNDAVIYPAPSLIE---ESKQVYPKFVFDDYMKLYAGLKFQPKEPRFEAMKAMEANVEL 309          
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO_DIACA (Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.606e-21
Identity = 47/65 (72.31%), Postives = 53/65 (81.54%), Query Frame = -2
Query:  204 RMSLASFYNPASDPVIYPAPALLEKEAEKKPVYPKFVFEGYMKLYVPLKFQPKDPRFQAMKAVAT 398
            RMS+ASFYNP SD VIYPAP L+EKE EK   YPKFVFE YM LY+ LKFQ K+PRF+AMKA+ T
Sbjct:  250 RMSIASFYNPGSDAVIYPAPTLVEKEEEKCRAYPKFVFEDYMNLYLKLKFQEKEPRFEAMKAMET 314          
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO3_PETHY (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.340e-20
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = -2
Query:  198 RMSLASFYNPASDPVIYPAPALLEKEAEK--KPVYPKFVFEGYMKLYVPLKFQPKDPRFQAMKAVATNV 398
            RMSLASFYNP SD VIYPAP L+EKEA++  K VYPKFVF+ YMKLY  LKFQ K+PRF+AMKA   +V
Sbjct:  244 RMSLASFYNPGSDAVIYPAPTLVEKEADQECKQVYPKFVFDDYMKLYAGLKFQAKEPRFEAMKAREADV 312          
The following BLAST results are available for this feature:
BLAST of CX305211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ACCO_DIOKA3.083e-2575.711-aminocyclopropane-1-carboxylate oxidase OS=Diosp... [more]
ACCO_PRUMU1.530e-2477.141-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
ACCO1_PETHY8.394e-2374.291-aminocyclopropane-1-carboxylate oxidase 1 OS=Pet... [more]
ACCO3_CUCME1.432e-2270.421-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
ACCO1_CUCME2.442e-2272.601-aminocyclopropane-1-carboxylate oxidase 1 OS=Cuc... [more]
ACCO_ACTDE5.441e-2270.421-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
ACCO4_PETHY7.106e-2270.001-aminocyclopropane-1-carboxylate oxidase 4 OS=Pet... [more]
ACCO4_SOLLC2.068e-2171.011-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
ACCO_DIACA4.606e-2172.31Probable 1-aminocyclopropane-1-carboxylate oxidase... [more]
ACCO3_PETHY1.340e-2071.011-aminocyclopropane-1-carboxylate oxidase 3 OS=Pet... [more]

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Properties
Property NameValue
Genbank descriptionC18002E10Rv Drought1 Citrus clementina cDNA clone C18002E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305211 ID=CX305211; Name=CX305211; organism=Citrus clementina; type=EST; length=402bp
TCTGTTTTTTTTTTTTTTTTTTTTTTTTTTACTACGAAACACAGTTTATT
TTATTTATTTGGAAGAGACTACTATCACAGAGGAGTTACATTTGTTACTG
GCTACAAATAATATAAATGGATGTGACACCACTCCAGCAGATAAAAATAA
TTTGGCTATAAAATAATAGTTTAAGCGGGGGCAATTGGACCCAAGTTAAC
ATTAGTTGCCACAGCTTTCATGGCTTGAAATCTGGGATCCTTGGGCTGGA
ACTTGAGGGGAACATACAGCTTCATGTAGCCCTCAAAAACAAATTTTGGG
TACACTGGTTTCTTCTCAGCTTCTTTTTCAAGCAATGCTGGTGCTGGATA
GATCACAGGATCACTTGCAGGATTGTAGAATGAAGCTAGGGACATCCGGC
CC
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