CX305237

Overview
NameCX305237
Unique NameCX305237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1665 contig Ccv1_Contig1665:583..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305237 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.757e-49
Identity = 89/136 (65.44%), Postives = 115/136 (84.56%), Query Frame = -3
Query:  223 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIK 630
            GKL E+T+MRK+G + +N+HF+SFNTICDATQERQDAM+K+VE  +DL++V+GG+NSSNT+HLQEI+ +R IPSY IDS  RIGPGN++ +K +H  L  KENWLP+G I +GITSGASTPDK V DVL+K+F +K
Sbjct:  262 GKLFERTLMRKYGPDQINQHFLSFNTICDATQERQDAMFKLVEYPLDLMVVIGGFNSSNTTHLQEISIEREIPSYHIDSADRIGPGNRVEHKPLHRPLEIKENWLPEGPIVVGITSGASTPDKVVSDVLEKIFALK 397          
BLAST of CX305237 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP6 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispH PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.085e-48
Identity = 85/137 (62.04%), Postives = 119/137 (86.86%), Query Frame = -3
Query:  220 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKR 630
            GKL E+T+++K+G + +N+HF++FNTICDATQERQDAM+++VEE +DLI+V+GG+NSSNT+HLQEIA +R IPS+ ID+ +RIGPGN+I +K +H +L   E WLP G +TIGITSGASTPDK VEDV++++F+++R
Sbjct:  261 GKLFERTLLKKYGPQALNDHFLAFNTICDATQERQDAMFQLVEEPLDLIVVIGGFNSSNTTHLQEIAIERQIPSFHIDAAERIGPGNRIEHKPLHTDLTTTEPWLPAGPLTIGITSGASTPDKVVEDVIERLFDLQR 397          
BLAST of CX305237 vs. ExPASy Swiss-Prot
Match: ISPH_SYNE7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=ispH PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.085e-48
Identity = 85/137 (62.04%), Postives = 119/137 (86.86%), Query Frame = -3
Query:  220 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKR 630
            GKL E+T+++K+G + +N+HF++FNTICDATQERQDAM+++VEE +DLI+V+GG+NSSNT+HLQEIA +R IPS+ ID+ +RIGPGN+I +K +H +L   E WLP G +TIGITSGASTPDK VEDV++++F+++R
Sbjct:  261 GKLFERTLLKKYGPQALNDHFLAFNTICDATQERQDAMFQLVEEPLDLIVVIGGFNSSNTTHLQEIAIERQIPSFHIDAAERIGPGNRIEHKPLHTDLTTTEPWLPAGPLTIGITSGASTPDKVVEDVIERLFDLQR 397          
BLAST of CX305237 vs. ExPASy Swiss-Prot
Match: ISPH_ACAM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=ispH PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.254e-48
Identity = 85/140 (60.71%), Postives = 115/140 (82.14%), Query Frame = -3
Query:  211 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEA 630
            GKL E+T+MRK+G   VNEHF+SFNTICDATQERQDA++++V+E +DL++V+GG+NSSNT+HLQEI+ D+ IPSY IDS  RIGPGN++ +K ++ +L   +NWLP G + IG+TSGASTPDK V D+++K+F IK   A
Sbjct:  270 GKLFERTVMRKYGPAQVNEHFLSFNTICDATQERQDAIFQLVDEPLDLMVVIGGFNSSNTTHLQEISIDKNIPSYHIDSVDRIGPGNRVEHKPLNADLTVTDNWLPNGPLAIGVTSGASTPDKVVSDIVEKIFSIKSASA 409          
BLAST of CX305237 vs. ExPASy Swiss-Prot
Match: ISPH_THEEB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispH PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.998e-47
Identity = 88/136 (64.71%), Postives = 111/136 (81.62%), Query Frame = -3
Query:  223 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIK 630
            GKL E+TM++K+G + +NEHF+SFNTICDATQERQDAM  +V+E +DL++V+GG+NSSNT+HLQEIA + GIPSY IDS  RIGPGN+I +K +H      ENWLP   ITIGITSGASTPDK VE+VL K+F ++
Sbjct:  261 GKLFERTMIQKYGPDRLNEHFMSFNTICDATQERQDAMLSLVKEPLDLMVVIGGYNSSNTTHLQEIAIEHGIPSYHIDSADRIGPGNRIEHKPLHQNPTVAENWLPDRPITIGITSGASTPDKVVEEVLNKIFALR 396          
BLAST of CX305237 vs. ExPASy Swiss-Prot
Match: ISPH_CYAA5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain ATCC 51142) GN=ispH PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.336e-46
Identity = 87/141 (61.70%), Postives = 115/141 (81.56%), Query Frame = -3
Query:  208 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEAL 630
            GKL E TM++K+G   +NEHF+SFNTICDATQERQDAM  +VEE+VD+++V+GG+NSSNT+HLQEI+ ++GI SY IDS+KRI PGNKI +K +  ++  KENWLP G+I +G+TSGASTPDK VE V++++FE K    L
Sbjct:  261 GKLFETTMLKKYGPTELNEHFMSFNTICDATQERQDAMLNLVEEEVDVMVVIGGFNSSNTTHLQEISIEKGIDSYHIDSDKRILPGNKIEHKPLEKDIETKENWLPDGKIIVGVTSGASTPDKVVEAVIERIFEEKNAGVL 401          
BLAST of CX305237 vs. ExPASy Swiss-Prot
Match: ISPH_SYNY3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=ispH PE=3 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 9.576e-45
Identity = 84/139 (60.43%), Postives = 111/139 (79.86%), Query Frame = -3
Query:  214 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREE 630
            GKL EKT+++K+G   +N HF+SFNTICDATQERQDAM+ +VEE + L++V+GG+NSSNT+HLQEIA + GIPS  IDS  RIGPGN++ +K +  +L   E WLP G+IT+G+TSGASTPDK VE+V+KK+  IK  +
Sbjct:  234 GKLFEKTLLQKYGPIELNNHFMSFNTICDATQERQDAMFDLVEEDLSLMVVIGGFNSSNTTHLQEIAVEHGIPSVHIDSGDRIGPGNRVEHKPLGKDLEVLEPWLPAGKITVGVTSGASTPDKVVEEVMKKILAIKEAQ 372          
BLAST of CX305237 vs. ExPASy Swiss-Prot
Match: ISPH_ANAVT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.633e-44
Identity = 82/141 (58.16%), Postives = 114/141 (80.85%), Query Frame = -3
Query:  208 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEAL 630
            GKL E TM++K+G   +N+HF SFNTICDATQERQDAM ++V+E +DL++V+GG+NSSNT+ LQ+I+++RG+PSY ID  +RI   N I ++ ++GELV  ENWLP G+I +G+TSGASTPDK VEDV++K+F +K   A+
Sbjct:  261 GKLFEHTMLQKYGPVELNQHFQSFNTICDATQERQDAMLELVQENLDLMIVIGGFNSSNTTQLQQISQERGLPSYHIDVVERIKSVNSIEHRQLNGELVTTENWLPAGKIVVGVTSGASTPDKVVEDVIEKIFALKATTAV 401          
BLAST of CX305237 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP2 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispH PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.133e-44
Identity = 84/140 (60.00%), Postives = 111/140 (79.29%), Query Frame = -3
Query:  211 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEA 630
            GKL E+TM+ KFG   +N+HF+SFNTICDATQERQDAM+ +VE+ +DL++V+GG+NSSNT+HLQEIA +R IPSY IDS  R+   N IA+K + GE+  + +WLP G++ IG+TSGASTPDK VEDV+ K+F  K + A
Sbjct:  261 GKLFEQTMLEKFGPTEINDHFMSFNTICDATQERQDAMFDLVEKDLDLMVVIGGFNSSNTTHLQEIAVERNIPSYHIDSGDRLLGNNVIAHKPLDGEITTQTHWLPAGKLKIGVTSGASTPDKVVEDVIAKIFAEKAQPA 400          
BLAST of CX305237 vs. ExPASy Swiss-Prot
Match: ISPH_ANASP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena sp. (strain PCC 7120) GN=ispH PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.133e-44
Identity = 82/141 (58.16%), Postives = 114/141 (80.85%), Query Frame = -3
Query:  208 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEAL 630
            GKL E TM++K+G   +N+HF SFNTICDATQERQDAM ++V+E +DL++V+GG+NSSNT+ LQ+I+++RG+PSY ID  +RI   N I ++ ++GELV  ENWLP G+I +G+TSGASTPDK VEDV++K+F +K   A+
Sbjct:  261 GKLFEHTMLQKYGPVELNQHFQSFNTICDATQERQDAMLELVQENLDLMIVIGGFNSSNTTQLQQISQERGLPSYHIDVVERIKSINSIEHRQLNGELVTTENWLPAGKIVVGVTSGASTPDKVVEDVIEKIFALKATAAV 401          
The following BLAST results are available for this feature:
BLAST of CX305237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
ISPH_CYAP43.757e-4965.444-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNP67.085e-4862.044-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNE77.085e-4862.044-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ACAM19.254e-4860.714-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THEEB5.998e-4764.714-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAA51.336e-4661.704-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNY39.576e-4560.434-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ANAVT1.633e-4458.164-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNP22.133e-4460.004-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ANASP2.133e-4458.164-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC18002H05Rv Drought1 Citrus clementina cDNA clone C18002H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305237 ID=CX305237; Name=CX305237; organism=Citrus clementina; type=EST; length=632bp
CGAGGGACTTTTTTTTTTTTTTTTTTTTTTTATAGAAATTGTAATCTCTA
GCTTCATATTGCACAAAAAATATAAATTTCAGATTACATGGGCACTGATA
AAAGACCCGGCAGAGGGCTGTGTTTATAATTTTACAATATCTAGTGATAC
AATCACATCGAAATTTATTGATAATGTGTATGTTTGGACCTCAGTTTACG
CTAATTGCAAGGCTTCTTCACGCTTGATCTCAAATACCTTTTTAAGGACG
TCTTCAACAGCCTTATCTGGGGTGGAGGCACCGGATGTTATACCGATTGT
GATCTGGCCTTTCGGCAGCCAATTTTCTTTCTCCACCAGCTCACCATGCA
TCAATTTATATGCTATTTTGTTTCCGGGACCTATTCTCTTCTCACTATCG
ATCCAGTATGAGGGAATTCCACGGTCTTCTGCAATCTCTTGAAGGTGTGA
GGTATTGCTCGAGTTCCACCCACCAACAACCAAGATAAGATCGACCTTTT
CCTCAACCATCTTATACATTGCATCTTGTCGCTCCTGTGTAGCATCACAA
ATTGTGTTGAAGCTTATGAAGTGTTCATTGACATTTTCAACTCCAAATTT
ACGCATCATGGTCTTCTCGACTAGTTTTCCAA
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