CX305301

Overview
NameCX305301
Unique NameCX305301
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9320 contig Ccv1_Contig9320:55..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305301 vs. ExPASy Swiss-Prot
Match: NDUA8_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Pongo pygmaeus GN=NDUFA8 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.899e-12
Identity = 31/89 (34.83%), Postives = 52/89 (58.43%), Query Frame = -1
Query:  221 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCL-YHHTNEFDFCRKEQQAFEK 484
            SSAVL A++ H G +C   N EF+ C+ ++ +P +CL++G+ V +C L   + + + C +   EY  C+ Y     F  CRK+Q  F++
Sbjct:   21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109          
BLAST of CX305301 vs. ExPASy Swiss-Prot
Match: NDUA8_PONAB (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Pongo abelii GN=NDUFA8 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.899e-12
Identity = 31/89 (34.83%), Postives = 52/89 (58.43%), Query Frame = -1
Query:  221 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCL-YHHTNEFDFCRKEQQAFEK 484
            SSAVL A++ H G +C   N EF+ C+ ++ +P +CL++G+ V +C L   + + + C +   EY  C+ Y     F  CRK+Q  F++
Sbjct:   21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109          
BLAST of CX305301 vs. ExPASy Swiss-Prot
Match: NDUA8_PANTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Pan troglodytes GN=NDUFA8 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 4.899e-12
Identity = 31/89 (34.83%), Postives = 52/89 (58.43%), Query Frame = -1
Query:  221 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCL-YHHTNEFDFCRKEQQAFEK 484
            SSAVL A++ H G +C   N EF+ C+ ++ +P +CL++G+ V +C L   + + + C +   EY  C+ Y     F  CRK+Q  F++
Sbjct:   21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109          
BLAST of CX305301 vs. ExPASy Swiss-Prot
Match: NDUA8_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Homo sapiens GN=NDUFA8 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 4.899e-12
Identity = 31/89 (34.83%), Postives = 52/89 (58.43%), Query Frame = -1
Query:  221 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCL-YHHTNEFDFCRKEQQAFEK 484
            SSAVL A++ H G +C   N EF+ C+ ++ +P +CL++G+ V +C L   + + + C +   EY  C+ Y     F  CRK+Q  F++
Sbjct:   21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109          
BLAST of CX305301 vs. ExPASy Swiss-Prot
Match: NDUA8_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Gorilla gorilla gorilla GN=NDUFA8 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 4.899e-12
Identity = 31/89 (34.83%), Postives = 52/89 (58.43%), Query Frame = -1
Query:  221 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCL-YHHTNEFDFCRKEQQAFEK 484
            SSAVL A++ H G +C   N EF+ C+ ++ +P +CL++G+ V +C L   + + + C +   EY  C+ Y     F  CRK+Q  F++
Sbjct:   21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109          
BLAST of CX305301 vs. ExPASy Swiss-Prot
Match: NDUA8_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Mus musculus GN=Ndufa8 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.862e-11
Identity = 31/89 (34.83%), Postives = 50/89 (56.18%), Query Frame = -1
Query:  221 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCL-YHHTNEFDFCRKEQQAFEK 484
            SSAVL A++ H G +C   N EF+ C+ ++ +P +CL +G+ V  C L   + +   C +   EY  CL Y +   F  CR++Q  F++
Sbjct:   21 SSAVLKAAAHHYGAQCDKTNKEFMLCRWEEKDPRRCLKEGKLVNGCALNFFRQIKSHCAEPFTEYWTCLDYSNMQLFRHCRQQQAKFDQ 109          
BLAST of CX305301 vs. ExPASy Swiss-Prot
Match: NDUA8_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Bos taurus GN=NDUFA8 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.431e-11
Identity = 30/89 (33.71%), Postives = 52/89 (58.43%), Query Frame = -1
Query:  221 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCL-YHHTNEFDFCRKEQQAFEK 484
            SS+VL A++ H G +C   N EF+ C+ ++ +P +CL++G+ V +C L   + + + C +   EY  C+ Y     F  CRK+Q  F++
Sbjct:   21 SSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNQCALEFFRQIKRHCAEPFTEYWTCIDYSGLQLFRRCRKQQAQFDE 109          
The following BLAST results are available for this feature:
BLAST of CX305301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NDUA8_PONPY4.899e-1234.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA8_PONAB4.899e-1234.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA8_PANTR4.899e-1234.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA8_HUMAN4.899e-1234.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA8_GORGO4.899e-1234.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA8_MOUSE1.862e-1134.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA8_BOVIN2.431e-1133.71NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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Properties
Property NameValue
Genbank descriptionC18003H09Rv Drought1 Citrus clementina cDNA clone C18003H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305301 ID=CX305301; Name=CX305301; organism=Citrus clementina; type=EST; length=559bp
TTTTTTTTTTTTTTCTTTTTTTTTATGTAGAATTGTCTTTTCAATCAAAA
ACATTTCCAGTGGGTGATCTTAACCGTACAAAAGGGGAATAACTCAAAGT
GAAAGGGAAATTCCATAAACAAATGTTTGCAAGAATAGTATTTGCTCACT
GCAAAGTGTCCTAACTTATTCTGGGCATCAAGTTACAGGTATCATTTGCC
AATCAGTTCAGAGGGCATGTTTTCTCAAATGCTTGCTGCTCTTTGCGACA
AAAATCAAACTCATTTGTATGGTGATACAAGCAACCAACATATTCATCCA
TCTCCTTCGTGCACTTTTGATGAAGATCTTTTAGCAAGCCAAGGACGCAG
CGAGTGACTTGGCGACCTTTATCGAGGCATTTTTCGGGATTGGGATCCTT
CTGCTTGCATTTCAAAAACTCGACATTTTCATGTTGGCATCTCAATCCGA
TGTGCTTAGACGACGCCGTTAGCACTGCCGATGACGGGATCGGATCACCG
CTAGGGTCCACAGCGGTTGCCATCTCCAATCGATTATTTTCAGATGAACC
TTTTGTCGA
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