CX305558

Overview
NameCX305558
Unique NameCX305558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length505
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig860 contig Ccv1_Contig860:1..505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305558 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.211e-18
Identity = 50/150 (33.33%), Postives = 82/150 (54.67%), Query Frame = 2
Query:   62 ATTLSFLILALASNSLLVLGTSSVPEPLLDVNGNKVQSTLKYYIVSAIWXXXXXXXXXXXXXXXYCPLDVIQLPSDTQNGIKLTLSPYNNST-IVRESTDLNLRFSVLLSGRD-YCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETL 505
            AT +  L+ A  S S      ++   P+LD +G+++Q+ ++YY++S+I                 CP  V+Q  SD  NG  +  S  ++   +VR STD+N+ F  +   RD  C+   +W++DNYD ++GKW++TT G+ G PG  TL
Sbjct:    4 ATAVVLLLFAFTSKSYFFGVANAANSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPI---RDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTL 150          
BLAST of CX305558 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 9.917e-16
Identity = 50/154 (32.47%), Postives = 78/154 (50.65%), Query Frame = 2
Query:   53 ISLATTLSFLILALASNSLLVLGTSSVPEPLLDVNGNKVQSTLKYYIVSAI--WXXXXXXXXXXXXXXXYCPLDVIQLPSDTQNGIKLTLSPYN-NSTIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETL 505
            +SL+      +LA A+N LL     S P P+LD++G K+++   YYIV  +                   CP  V+Q   +  +   L   P N    +VR STDLN+ FS  +  R       +W++D YD ++G++F+T GG+ G+PG ET+
Sbjct:    7 LSLSFFFVSALLAAAANPLLS-AADSAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCR--WTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETI 157          
BLAST of CX305558 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.016e-13
Identity = 45/126 (35.71%), Postives = 65/126 (51.59%), Query Frame = 2
Query:  134 PEPLLDVNGNKVQSTLKYYIVSAIWXXXXXXXXXXXXXXXY-CPLDVIQLPSDTQNGIKLTLSPYNN--STIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAET 502
            P+P++D++G  V   + Y++VSAIW                 CPL V+Q P D  NG  +  S   N    IV ES DLN++F++ ++    CNE   WKVD +    G W +T GG  G+ G E+
Sbjct:    3 PKPIVDIDGKPVLYGVDYFVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQDPFD--NGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFES 121          
The following BLAST results are available for this feature:
BLAST of CX305558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC6.211e-1833.3321 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU9.917e-1632.47Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA6.016e-1335.71Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC18007C02Rv Drought1 Citrus clementina cDNA clone C18007C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305558 ID=CX305558; Name=CX305558; organism=Citrus clementina; type=EST; length=505bp
GCGGGGAACGCGCATCAAACAGATATATAGCTTTGAAAACAACAAAATGA
AGATTTCATTAGCAACAACACTCTCTTTCCTTATCCTTGCCTTGGCCTCA
AACTCTTTGTTGGTCTTGGGCACCTCATCAGTTCCTGAACCTCTCCTTGA
TGTCAACGGCAACAAGGTCCAATCCACCCTTAAGTACTACATAGTCTCAG
CCATCTGGGGAGCTGGCGGTGGTGGAGTTAGCCTACACGGTGGCAGAAAC
GGATATTGTCCGCTGGACGTTATCCAATTACCTTCTGATACGCAAAATGG
AATCAAATTAACACTGTCACCGTATAACAATTCTACAATTGTCCGAGAAT
CCACTGATCTCAACTTGAGATTCTCAGTGTTGCTATCTGGACGTGACTAT
TGTAACGAACAACCGTTGTGGAAAGTTGATAATTATGACGCGGCATCAGG
CAAATGGTTTATAACAACCGGGGGACTTGATGGTCACCCTGGAGCTGAAA
CTTTG
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