CX305562

Overview
NameCX305562
Unique NameCX305562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305562 vs. ExPASy Swiss-Prot
Match: DXR_ARATH (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=DXR PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 2.361e-23
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = -1
Query:  273 EKAVELFVDGKISYLDIFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSSGRNPVPA 470
            EKAVE+F+D KISYLDIFKVVELTCDKHR +LV+SPSLE+I+HYD WAREY A++QLSSG  PV A
Sbjct:  412 EKAVEMFIDEKISYLDIFKVVELTCDKHRNELVTSPSLEEIVHYDLWAREYAANVQLSSGARPVHA 477          
BLAST of CX305562 vs. ExPASy Swiss-Prot
Match: DXR_ORYSJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DXR PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 4.452e-22
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = -1
Query:  276 EKAVELFVDGKISYLDIFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSSGRNPVP 470
            EKAVELF+D KI YLDIFKVVELTCD HR +LV+ PSLE+I+HYD WAREY ASLQ S+G +PVP
Sbjct:  408 EKAVELFIDEKIGYLDIFKVVELTCDAHRNELVTRPSLEEIIHYDLWAREYAASLQPSTGLSPVP 472          
BLAST of CX305562 vs. ExPASy Swiss-Prot
Match: DXR_MENPI (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Mentha piperita GN=DXR PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.583e-19
Identity = 42/63 (66.67%), Postives = 54/63 (85.71%), Query Frame = -1
Query:  282 EKAVELFVDGKISYLDIFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSSGRNP 470
            EKAVE+F+D KI YLDIFKVVELTCDKHR+++  SPSLE+I+HYD WAR+Y A++  S+G +P
Sbjct:  405 EKAVEMFIDEKIGYLDIFKVVELTCDKHRSEMAVSPSLEEIVHYDQWARDYAATVLKSAGLSP 467          
The following BLAST results are available for this feature:
BLAST of CX305562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DXR_ARATH2.361e-2377.271-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_ORYSJ4.452e-2275.381-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_MENPI1.583e-1966.671-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
back to top
Properties
Property NameValue
Genbank descriptionC18007C06Rv Drought1 Citrus clementina cDNA clone C18007C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305562 ID=CX305562; Name=CX305562; organism=Citrus clementina; type=EST; length=470bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCACTTGTTTCATTTGATAT
TTAACTAAGATATCATCAATGCTCCAATTTGTTAGCTAACGCATTCATAC
ATTTTGCAGCTAAAAAGTGGGGACATGTACTGAATCCCCAGCGTCTATTT
ATTTTATTTTACAATTGCTCCATGCCTCCACAAACCTTGGGAACAATACC
AGTTTTTAGCAAAAAGCAAACATGTATATCTTCCCAGATCTCAAATGGGG
CATTAATGGAAGCCATCACTCATGCCGGAACAGGGTTTCTACCAGATGAA
AGTTGCAAACTAGCTGTGTACTCTCGTGCCCACCCATCATAATGTAGTAT
ATCTTCTAGGGAAGGCGAGGACACCAAGTCTGCCCGGTGCTTATCACAGG
TTAACTCCACAACCTTGAAAATATCCAGATAGCTAATCTTTCCATCGACA
AACAACTCTACTGCTTTCTC
back to top