CX305602

Overview
NameCX305602
Unique NameCX305602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length407
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305602_ssr277 microsatellite CX305602_ssr277:277..288. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9835 contig Ccv1_Contig9835:256..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305602 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.676e-26
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 1
Query:   10 GPIGQAACGRCLRVINSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 216
            GP GQ +CGRCLRV N+GTG Q  VRIVDQC+NGGLDLD  VF +LDTNG+GYQQG LTV+YEFVNCND
Sbjct:   79 GPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTNGVGYQQGHLTVNYEFVNCND 147          
BLAST of CX305602 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.086e-25
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 1
Query:   10 GPIGQAACGRCLRVINSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 216
            GP GQ +CGRCLRV N+GTG Q  VRIVDQC+NGGLDLD  VF +LDTNG+GYQQG L V+YEFVNCND
Sbjct:   79 GPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTNGLGYQQGHLIVNYEFVNCND 147          
BLAST of CX305602 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.041e-25
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1
Query:   10 GPIGQAACGRCLRVINSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNC 210
            GP GQA+CGRCLRV N+GTG Q+ VRIVDQC NGGLDLD  VF +LDTNG+GYQ+G L V+YEFVNC
Sbjct:   77 GPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFNRLDTNGLGYQRGNLNVNYEFVNC 143          
BLAST of CX305602 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.958e-23
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 1
Query:   10 GPIGQAACGRCLRVINSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 216
            GP GQAACG+CLRV N  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   56 GPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 125          
BLAST of CX305602 vs. ExPASy Swiss-Prot
Match: WIN_SOYBN (Wound-induced protein (Fragment) OS=Glycine max GN=WIN PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.468e-22
Identity = 46/69 (66.67%), Postives = 58/69 (84.06%), Query Frame = 1
Query:   10 GPIGQAACGRCLRVINSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 216
            GP G+ +CG+CLRV N+GTGA  IVRIVDQC+NGGLDLD GVF ++DT+G GYQQG L V+Y+FV+C +
Sbjct:   19 GPRGRDSCGKCLRVTNTGTGANTIVRIVDQCSNGGLDLDVGVFNRIDTDGRGYQQGHLIVNYQFVDCGN 87          
BLAST of CX305602 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.504e-22
Identity = 50/70 (71.43%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   10 GPIGQAACGRCLRVINSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 216
            G  GQAACG+CLRV N  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   79 GAHGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 148          
BLAST of CX305602 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.243e-21
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = 1
Query:   10 GPIGQAACGRCLRVINSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 216
            GP G+ +CG+CLRV N+ TGAQ  VRIVDQC+NGGLDLD  VF+++DT+G+G QQG L V+Y+FVNC D
Sbjct:  130 GPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCGD 198          
BLAST of CX305602 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.623e-21
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   10 GPIGQAACGRCLRVINSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 216
            G  GQA+CG+CL+V N  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   77 GAHGQASCGKCLQVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 146          
BLAST of CX305602 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.616e-21
Identity = 43/69 (62.32%), Postives = 58/69 (84.06%), Query Frame = 1
Query:   10 GPIGQAACGRCLRVINSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 216
            G  GQ++CG+CL V N+GTGA+  VRIVDQC+NGGLDLD  VF++LDT+G GY++G +TV+Y+FV+C D
Sbjct:  121 GAHGQSSCGKCLSVTNTGTGAKTTVRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCGD 189          
BLAST of CX305602 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.795e-20
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 1
Query:   10 GPIGQAACGRCLRVINSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 216
            GP GQ +CG+CL V N+GTGA+  VRIVDQC+NGGLDLD  VF ++DTNG G  QG L V+Y+FV+C D
Sbjct:   39 GPTGQDSCGKCLLVTNTGTGAKVTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107          
The following BLAST results are available for this feature:
BLAST of CX305602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4A_TOBAC1.676e-2676.81Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC1.086e-2575.36Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC7.041e-2574.63Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
BARW_HORVU2.958e-2372.86Barwin OS=Hordeum vulgare PE=1 SV=1[more]
WIN_SOYBN1.468e-2266.67Wound-induced protein (Fragment) OS=Glycine max GN... [more]
WHW2_WHEAT2.504e-2271.43Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WIN2_SOLTU1.243e-2165.22Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
WHW1_WHEAT1.623e-2168.57Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
HEVE_HEVBR3.616e-2162.32Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
PR4_PRUPE1.795e-2063.77Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]

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Properties
Property NameValue
Genbank descriptionC18007G03Rv Drought1 Citrus clementina cDNA clone C18007G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305602 ID=CX305602; Name=CX305602; organism=Citrus clementina; type=EST; length=407bp
GCGGGGGGCGGACCCATTGGACAAGCTGCTTGTGGCAGGTGCTTAAGGGT
CATAAACAGTGGTACAGGAGCCCAACAAATTGTGAGAATTGTTGATCAGT
GTGCCAATGGAGGCTTAGATTTGGACGAAGGAGTGTTCAAGAAATTGGAC
ACCAATGGAATAGGCTATCAACAAGGCTTCCTTACTGTCAGCTACGAGTT
TGTGAACTGCAATGATTAAAGCACCATCTATAATTCCATGATCGATCGAA
GCTTAATGCTGTAATAGGGTTAATTTATTAATTAATTATCCCTCTATATA
CTTAGTTCATAAATAAAATAAAACTTCTGATGAAGTATCAAGAAGTGCTC
ATGGGCACTACAGTTATGTAATAAAAGTTTCCTTTTTTTATCCCTTAAAA
AAAAAAA
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