CX305838

Overview
NameCX305838
Unique NameCX305838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length315
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1030 contig Ccv1_Contig1030:185..499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX305838 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.654e-11
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:   70 CPLDVIQLPSDTQNGIKLTLSPYNNST-IVRESTDLNLRFSVLLSGRD-YCNEQPLWKVDNYDAASGKWFITTGGLDGHPGTET 315
            CP  V+Q  SD  NG  +  S  ++   +VR STD+N+ F  +   RD  C+   +W++DNYD ++GKW++TT G+ G PG  T
Sbjct:   69 CPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPI---RDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNT 149
The following BLAST results are available for this feature:
BLAST of CX305838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ASP_THECC5.654e-1140.4821 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
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Properties
Property NameValue
Genbank descriptionC18010H04Rv Drought1 Citrus clementina cDNA clone C18010H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305838 ID=CX305838; Name=CX305838; organism=Citrus clementina; type=EST; length=315bp
TACATAGTCTCAGCCATCTGGGGAGCTGGCGGTGGTGGAGTTAGCCTACA
CGGTGGCAGAAACGGATATTGTCCGCTGGACGTTATCCAATTACCTTCTG
ATACGCAAAATGGAATCAAATTAACACTGTCACCGTATAACAATTCTACA
ATTGTCCGAGAATCCACTGATCTCAACTTGAGATTCTCAGTGTTGCTATC
TGGACGTGACTATTGTAACGAACAACCGTTGTGGAAAGTTGATAATTATG
ACGCGGCATCAGGCAAATGGTTTATAACAACCGGGGGACTTGATGGTCAC
CCTGGAACTGAAACT
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