CX306014

Overview
NameCX306014
Unique NameCX306014
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10111 contig Ccv1_Contig10111:440..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306014 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.756e-24
Identity = 51/103 (49.51%), Postives = 70/103 (67.96%), Query Frame = -1
Query:  162 VRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSVGRFSFEDGVRRLVL 470
            VR STD+N+ FV +    + C+   +W++DNYD S+G+W++TT G+ G PG  TL +WFK+EK  + G YK   CPSVC+SC  LCS +GR S +DG  RL L
Sbjct:   98 VRVSTDVNIEFVPIRD--RLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG-YKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLAL 197          
BLAST of CX306014 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 2.068e-19
Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = -1
Query:  144 VRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSVGRFSFEDGVRRLVLVRDDEP 470
            VR STDLN+ F   +    +     +W++D YD S+G++F+T GG+ G+PG ET+ +WFK+E+    G YK+V CP+VC SC   C  VG +  + G RRL L   D+P
Sbjct:  105 VRVSTDLNINFSAFMPC--RWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLAL--SDKP 209          
BLAST of CX306014 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.124e-12
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = -1
Query:  153 VRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSVGRFSFEDGVRRLVLVRD 470
            V ES DLN++F   ++    CNE   WKVD +    G W +T GG  G+ G E+  + FK++K  LP +YK   CPS   + +  C++V  F  +  +RRL+L  D
Sbjct:   73 VFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAGLPFSYKFHFCPSYPRTRLIPCNNVDIFFDKYRIRRLILTND 173          
The following BLAST results are available for this feature:
BLAST of CX306014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC4.756e-2449.5121 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU2.068e-1943.12Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA7.124e-1237.74Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC18013A02Rv Drought1 Citrus clementina cDNA clone C18013A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306014 ID=CX306014; Name=CX306014; organism=Citrus clementina; type=EST; length=470bp
TTATTCATAATTTTAATCCTAGAGATTAAAGAGCAGCTAGCCTGGTCCGT
TATTTAGAATAATAATACCGCTAGCTGGTTAGGGTACATTGATTACACAG
ACGTCGATCTTTCTCTAGCTGGAATTAACACAACAGGAAAAGCCGGCTCA
TCATCACGAACCAGAACCAGACGTCGAACGCCATCCTCAAACGAAAAGCG
GCCAACGCTGCTGCAGAGTTTGACGCAAGACTCGCAAACAGATGGACAAT
GAACAATTTTGTATGCACCTGGCAGATTAGTTTTCTCAAGCTTAAACCAA
TTTAGCAACGTTTCAGCTCCAGGGTGACCATCAAGTCCCCCGGTTGTTAT
AAACCATCTGCCTGATGAAGCGTCATAGTTATCAACTTTCCACAACGGTA
GCTCGTTACATTGCTTACTTCCAGATAGTAACCCTACGAATCTCAAGTTG
AGATCAGTGGATTCTCTGAC
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