CX306016

Overview
NameCX306016
Unique NameCX306016
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1030 contig Ccv1_Contig1030:440..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX306016 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.563e-13
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 AGGKWFIITGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKLCNNVGR-SFEDGVRRLVL 207
            + GKW++ T G+ G PG  TL +WFK+EK G     YK   CPSVC+SC  LC+++GR S +DG  RL L
Sbjct:  130 SAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVL--GYKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLAL 197
[Close]
BLAST of CX306016 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 9.703e-11
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:    7 GKWFIITGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKLCNNVGRSFEDGVRRLVLVRDDEPAF 231
            G++F+  GG+ G+PG ET+ +WFK+E+     G YK+V CP+VC SC   C +VG   +   RR + + D   AF
Sbjct:  139 GQYFVTIGGVKGNPGPETISSWFKIEEFCG-SGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSDKPFAF 212
The following BLAST results are available for this feature:
BLAST of CX306016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC3.563e-1350.0021 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU9.703e-1141.33Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
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Properties
Property NameValue
Genbank descriptionC18013A04Rv Drought1 Citrus clementina cDNA clone C18013A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306016 ID=CX306016; Name=CX306016; organism=Citrus clementina; type=EST; length=280bp
GCGGGAGGCAAATGGTTTATAATAACCGGGGGACTTGATGGTCACCCTGG
AGCTGAAACTTTGCTAAATTGGTTTAAGCTTGAGAAAATTGGAAATTTTC
CAGGTACATACAAAATCGTTCATTGTCCATCCGTTTGCGAGTCTTGTGTC
AAACTCTGCAACAACGTTGGCCGTTCGTTTGAGGATGGCGTTCGACGTCT
GGTTCTGGTTCGTGATGATGAGCCGGCATTTCCCGTTGTGTTAATTCCCG
CTACAGAAAGATCAACGTCTGTGTAATCAA
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