CX306020

Overview
NameCX306020
Unique NameCX306020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig824 contig Ccv1_Contig824:225..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.189e-26
Identity = 54/74 (72.97%), Postives = 66/74 (89.19%), Query Frame = 3
Query:    6 MDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 227
            +DGGVRRGTDVFKALALGA  + IGRPVV+ LAA+GE GVR+V++ML+DEFELTMAL+GC S+K I+RNH+ TE
Sbjct:  284 LDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTE 357          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.575e-25
Identity = 53/74 (71.62%), Postives = 65/74 (87.84%), Query Frame = 3
Query:    6 MDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 227
            +DGGVRRGTDVFKALALGA  + IGRPVV+ LAA+GE GV++V++ML+DEFELTMAL+GC S+  ITRNH+ TE
Sbjct:  284 LDGGVRRGTDVFKALALGASGIFIGRPVVFALAAEGEAGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTE 357          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.343e-24
Identity = 50/74 (67.57%), Postives = 65/74 (87.84%), Query Frame = 3
Query:    6 MDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 227
            +DGGVRRGTDVFKALALGA  V IGRPVV+ LAA+GE GV++V++M++DEFELTMAL+GC S+K I+R+H+  +
Sbjct:  284 LDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAAD 357          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.255e-20
Identity = 46/72 (63.89%), Postives = 60/72 (83.33%), Query Frame = 3
Query:    6 MDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVR 221
            +DGGVR+GTDV KALALGA+AV +GRP+V+GLA +GE GV+ V+E+LK+EF L MAL+GC +VK I +  VR
Sbjct:  290 LDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVR 361          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.557e-20
Identity = 45/72 (62.50%), Postives = 60/72 (83.33%), Query Frame = 3
Query:    6 MDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVR 221
            +DGGVR+GTDV KALALGA+AV +GRP+++GLA +GE GV+ V+E+LK+EF L MAL+GC +VK I +  VR
Sbjct:  290 LDGGVRKGTDVLKALALGAKAVFVGRPIIWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVR 361          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.788e-18
Identity = 42/72 (58.33%), Postives = 56/72 (77.78%), Query Frame = 3
Query:    6 MDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVR 221
            +DGGVR G DV KALALGA+ + +GRP+++GLA KGE+GV+ V+ +L +EF  +MALTGC SV  I RN V+
Sbjct:  276 LDGGVRTGNDVLKALALGAKCIFLGRPILWGLACKGEHGVKEVLNILTNEFHTSMALTGCRSVAEINRNLVQ 347          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.159e-17
Identity = 39/72 (54.17%), Postives = 57/72 (79.17%), Query Frame = 3
Query:    6 MDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVR 221
            +DGG+R G DV KALALGA+ V +GRP+++GLA KGE+GV+ V+++LK+EF  +M LTGC SV  I ++ ++
Sbjct:  278 LDGGIRTGNDVLKALALGAKCVFVGRPILWGLAYKGEHGVKEVLDILKNEFHTSMTLTGCRSVAEINQDLIQ 349          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: HAOX2_MOUSE (Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.581e-17
Identity = 39/67 (58.21%), Postives = 53/67 (79.10%), Query Frame = 3
Query:    6 MDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHIT 206
            MDGGVR G DV KALALGA+ + +GRP+++GLA KGE+GV+ V+++LK+E    MAL+GC SV  I+
Sbjct:  278 MDGGVRTGNDVLKALALGARCIFLGRPIIWGLACKGEDGVKEVLDILKEELHTCMALSGCRSVAEIS 344          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.868e-16
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = 3
Query:    6 MDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHIT 206
            MDGGVR GTDV KALALGA+ + +GRP+++GLA KGE+GV+ V+++L  E    M L+GC SV  I+
Sbjct:  278 MDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEIS 344          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: MDLB_PSEPU ((S)-mandelate dehydrogenase OS=Pseudomonas putida GN=mdlB PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.850e-15
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = 3
Query:    6 MDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 227
            +D G RRG+D+ KALALGA+AVL+GR  +YGLAA+GE GV  V+ +LK + + T+A  GCP +  ++ ++++ E
Sbjct:  302 IDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE 375          
The following BLAST results are available for this feature:
BLAST of CX306020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
GOX2_ARATH5.189e-2672.97Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX1_ARATH2.575e-2571.62Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
GOX_SPIOL6.343e-2467.57Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
HAOX1_HUMAN4.255e-2063.89Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX1_MOUSE5.557e-2062.50Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX2_HUMAN1.788e-1858.33Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]
HAOX2_BOVIN1.159e-1754.17Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
HAOX2_MOUSE2.581e-1758.21Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2... [more]
HAOX2_RAT4.868e-1656.72Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]
MDLB_PSEPU1.850e-1548.65(S)-mandelate dehydrogenase OS=Pseudomonas putida ... [more]

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Properties
Property NameValue
Genbank descriptionC18013A08Rv Drought1 Citrus clementina cDNA clone C18013A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306020 ID=CX306020; Name=CX306020; organism=Citrus clementina; type=EST; length=432bp
GCGGGATGGATGGAGGAGTGCGGCGAGGAACAGATGTTTTCAAGGCATTG
GCCCTCGGTGCACAAGCTGTACTTATTGGAAGGCCTGTAGTCTACGGCCT
TGCTGCAAAAGGGGAAAATGGGGTGAGACGCGTCATCGAAATGCTGAAGG
ATGAGTTTGAGTTGACCATGGCCCTTACTGGCTGTCCTAGTGTGAAACAT
ATTACCAGGAACCATGTGAGAACTGAGCAGGAGAGAATCCATTCGATGCT
GTAATATTATTCTGTTGCAGAAATGTCTAAGGGTGCGTTTGGCACGCTCT
ATTGTATTATGTTGTATTGTATTATTTTAATACAGTTATATTGTATTATT
TTGTATTGTATTAGTATTGAATTATAATAATATTGTACAACGTTTGGTAT
TACGTTATACTGTATTAATTTTTAATTATATC
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