CX306023

Overview
NameCX306023
Unique NameCX306023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14757 contig Ccv1_Contig14757:246..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 4.751e-54
Identity = 105/165 (63.64%), Postives = 118/165 (71.52%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCFNREVGVASSDYC--DPNYPCR-GKCY-GRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            CPAR FYTYDAFI AAK+FPAF  +G++  RKRE+AAF AQT HETTG  GW  AP G Y WGYC+NRE+  A  DYC  DPNYPC  GK Y GRGP+QL+WNYNY +C           NNPDLLATDP +SFKSA W WMT Q PKPSCH+VII  W P  +D
Sbjct:   93 CPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELNPA--DYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQC--GRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSD 252          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 1.805e-53
Identity = 105/165 (63.64%), Postives = 119/165 (72.12%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCFNREVGVASSDYC--DPNYPCR-GKCY-GRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            CPAR FYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTG  GW  AP G YAWGYC+NRE+   SS YC  DPNYPC  GK Y GRGP+QLSWNYNY +C           NNPDLL++DP +SFKSA W WMT Q PKPSCH VII  W P ++D
Sbjct:   73 CPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSS-YCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQC--GRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSD 233          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.805e-53
Identity = 105/165 (63.64%), Postives = 119/165 (72.12%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCFNREVGVASSDYC--DPNYPCR-GKCY-GRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            CPAR FYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTG  GW  AP G YAWGYC+NRE+   SS YC  DPNYPC  GK Y GRGP+QLSWNYNY +C           NNPDLL++DP +SFKSA W WMT Q PKPSCH VII  W P ++D
Sbjct:   95 CPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSS-YCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQC--GRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSD 255          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 4.022e-53
Identity = 97/163 (59.51%), Postives = 116/163 (71.17%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN--YPCRG--KCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            CPAR FYTY+AFI AAK+FP FG +G+   RK+E+AAFF QT HETTGGW  AP G Y+WGYCF +E   A SDYC+P+  +PC    + YGRGP+QLSWNYNY  C           NNPDL+A D V++FK+AIW WMTAQPPKPSCH VI  +W+P   D
Sbjct:  107 CPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPA-SDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLC--GRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDAD 266          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 5.253e-53
Identity = 98/163 (60.12%), Postives = 117/163 (71.78%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN--YPC-RGKC-YGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            CPAR FYTYDAFI AAK+FP FG +G+   RK+EIAAFF QT HETTGGW  AP G Y+WGYCF +E    SS+YC P+  +PC  GK  YGRGP+QLSWNYNY +C           NNPDL++ DPV++FK+AIW WMT Q PKPSCH VI+ +W+P   D
Sbjct:   92 CPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQN-PSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQC--GRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDAD 251          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 6.861e-53
Identity = 99/163 (60.74%), Postives = 116/163 (71.17%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYC--DPNYPCR-GKC-YGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            CPA+ FYTYDAF+ AAK+FP+FG +G+  +RKRE+AAF  QT HETTGGWP AP G YAWGYCF +E    SS+YC   P YPC  GK  YGRGP+QLSWNYNY  C            NPDL+ATD VLSFK+A+W WMT Q PKPSCH+V+   W+P A D
Sbjct:   23 CPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERN-PSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPC--GEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAAD 182          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 1.996e-52
Identity = 99/163 (60.74%), Postives = 116/163 (71.17%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN--YPCR--GKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            C  + FY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC+ RE G +  DYC P+  +PC    K +GRGPIQ+S NYNY  C           NNPDL+ATDPV+SFKSA+W WMT Q PKPSCH+VII  W+P A D
Sbjct:  101 CQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQG-SPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGD 260          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 5.808e-52
Identity = 96/162 (59.26%), Postives = 112/162 (69.14%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPNYPCR--GKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPANDV 482
            CPA+ FYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYCF RE   ++     P +PC    + YGRGPIQ+SWNYNY +C           N PDL+ATD V+SFKSA+W WMTAQ PKPS H+VI   W P + DV
Sbjct:   97 CPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQC--GRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADV 256          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 5.808e-52
Identity = 96/162 (59.26%), Postives = 112/162 (69.14%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPNYPCR--GKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPANDV 482
            CPA+ FYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYCF RE   ++     P +PC    + YGRGPIQ+SWNYNY +C           N PDL+ATD V+SFKSA+W WMTAQ PKPS H+VI   W P + DV
Sbjct:   96 CPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQC--GRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADV 255          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 7.586e-52
Identity = 100/164 (60.98%), Postives = 112/164 (68.29%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDP--NYPC-RGKCY-GRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPANDV 482
            CPA  FYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT HETTGGWPDAP G YAWGYC+ +E+      YCDP  NY C  GK Y GRGPIQLSWNYNY  C             P+L+ TDPV+SFK+AIW WM  Q PKPSCH VI   W P A D+
Sbjct:  110 CPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN--CQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLC--GDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADL 269          
The following BLAST results are available for this feature:
BLAST of CX306023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI1_THECC4.751e-5463.64Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI2_GOSHI1.805e-5363.64Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI1.805e-5363.64Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIB_ARATH4.022e-5359.51Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_BRANA5.253e-5360.12Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIT_CARPA6.861e-5360.74Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI1_TOBAC1.996e-5260.74Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIT_PHAVU5.808e-5259.26Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU5.808e-5259.26Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI6_POPTR7.586e-5260.98Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]

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Properties
Property NameValue
Genbank descriptionC18013A11Rv Drought1 Citrus clementina cDNA clone C18013A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306023 ID=CX306023; Name=CX306023; organism=Citrus clementina; type=EST; length=485bp
GATGCCCTGCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCC
AAAGCTTTTCCAGCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAG
AGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGAT
GGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGG
GAAGTTGGCGTTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCG
AGGGAAGTGCTATGGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATT
ACTTACGGTGCGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACAAT
CCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCTG
GTCCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTA
TCGACGAATGGAAACCACCAGCAAATGACGTAAAC
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