CX306061

Overview
NameCX306061
Unique NameCX306061
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10531 contig Ccv1_Contig10531:183..503. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX306061 vs. ExPASy Swiss-Prot
Match: GID2_ARATH (F-box protein GID2 OS=Arabidopsis thaliana GN=GID2 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 6.250e-11
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   67 QNEHLWKLICTHHFANVGCATQ*LRSVVLALVGSRRLHSLYL 192
            Q+E LW+LICT H+ N+GC    LRSVVLAL G RRLHSLYL
Sbjct:   67 QDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYL 108

HSP 2 Score: 23.8682 bits (50), Expect = 6.250e-11
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 2 
Query:   38 CVNKLWHKT 64
            CV+K+WHKT
Sbjct:   57 CVSKIWHKT 65
The following BLAST results are available for this feature:
BLAST of CX306061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GID2_ARATH6.250e-1169.05F-box protein GID2 OS=Arabidopsis thaliana GN=GID2... [more]
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Properties
Property NameValue
Genbank descriptionC18013E05Rv Drought1 Citrus clementina cDNA clone C18013E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306061 ID=CX306061; Name=CX306061; organism=Citrus clementina; type=EST; length=321bp
GCGGGGGCGGACACCAGGACTTCGTTGCAGGCTGCCTTGCGTCAACAAGC
TATGGCACAAGACACTCAAAATGAACACCTTTGGAAGTTAATTTGCACCC
ACCACTTCGCTAACGTTGGGTGCGCTACCCAATAGCTCAGATCTGTTGTC
CTGGCTCTCGTTGGCTCCCGTCGCCTTCACTCCCTCTATCTCGGTGGCTG
CCGTCGCTTTCTCTCTCTGCCATTCTTTCTCTCACAGTCGAAACCAAAAC
TCAAATCCCTAACTCCCCGGCCACAAAACCTCTCATTTGCCTCAAAACCN
ANNAAAAAAAAAAAAAAAAAA
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