CX306064

Overview
NameCX306064
Unique NameCX306064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length435
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306064 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 7.152e-31
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = -1
Query:  205 WTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 435
            WTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDLD  VF +LDTNG+GYQQG LTV+YEFVNCND
Sbjct:   71 WTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTNGVGYQQGHLTVNYEFVNCND 147          
BLAST of CX306064 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.636e-30
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = -1
Query:  205 WTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 435
            WTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDLD  VF +LDTNG+GYQQG L V+YEFVNCND
Sbjct:   71 WTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTNGLGYQQGHLIVNYEFVNCND 147          
BLAST of CX306064 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.005e-29
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = -1
Query:  211 WTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNC 435
            WTAFC   GP GQA+CGRCLRVTN+GTG Q+ VRIVDQC NGGLDLD  VF +LDTNG+GYQ+G L V+YEFVNC
Sbjct:   69 WTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFNRLDTNGLGYQRGNLNVNYEFVNC 143          
BLAST of CX306064 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.262e-27
Identity = 57/78 (73.08%), Postives = 63/78 (80.77%), Query Frame = -1
Query:  205 WTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 435
            WTAFC   GP GQAACG+CLRVTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   48 WTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 125          
BLAST of CX306064 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.069e-26
Identity = 56/78 (71.79%), Postives = 62/78 (79.49%), Query Frame = -1
Query:  205 WTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 435
            WTAFC   G  GQAACG+CLRVTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   71 WTAFCGPAGAHGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 148          
BLAST of CX306064 vs. ExPASy Swiss-Prot
Match: WIN_SOYBN (Wound-induced protein (Fragment) OS=Glycine max GN=WIN PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.396e-26
Identity = 52/77 (67.53%), Postives = 64/77 (83.12%), Query Frame = -1
Query:  205 WTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 435
            WTAFC   GP G+ +CG+CLRVTN+GTGA  IVRIVDQC+NGGLDLD GVF ++DT+G GYQQG L V+Y+FV+C +
Sbjct:   11 WTAFCGPVGPRGRDSCGKCLRVTNTGTGANTIVRIVDQCSNGGLDLDVGVFNRIDTDGRGYQQGHLIVNYQFVDCGN 87          
BLAST of CX306064 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.927e-26
Identity = 54/78 (69.23%), Postives = 62/78 (79.49%), Query Frame = -1
Query:  205 WTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 435
            WTAFC   G  GQA+CG+CL+VTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   69 WTAFCGPAGAHGQASCGKCLQVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 146          
BLAST of CX306064 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.182e-25
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = -1
Query:  205 WTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 435
            WTAFC   GP G+ +CG+CLRVTN+ TGAQ  VRIVDQC+NGGLDLD  VF+++DT+G+G QQG L V+Y+FVNC D
Sbjct:  122 WTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCGD 198          
BLAST of CX306064 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.438e-25
Identity = 49/77 (63.64%), Postives = 64/77 (83.12%), Query Frame = -1
Query:  205 WTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 435
            WTAFC   G  GQ++CG+CL VTN+GTGA+  VRIVDQC+NGGLDLD  VF++LDT+G GY++G +TV+Y+FV+C D
Sbjct:  113 WTAFCGPVGAHGQSSCGKCLSVTNTGTGAKTTVRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCGD 189          
BLAST of CX306064 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.706e-24
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = -1
Query:  205 WTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 435
            WTAFC   GP GQ +CG+CL VTN+GTGA+  VRIVDQC+NGGLDLD  VF ++DTNG G  QG L V+Y+FV+C D
Sbjct:   31 WTAFCGPVGPTGQDSCGKCLLVTNTGTGAKVTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107          
The following BLAST results are available for this feature:
BLAST of CX306064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4A_TOBAC7.152e-3176.62Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC4.636e-3075.32Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC3.005e-2974.67Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
BARW_HORVU1.262e-2773.08Barwin OS=Hordeum vulgare PE=1 SV=1[more]
WHW2_WHEAT1.069e-2671.79Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WIN_SOYBN1.396e-2667.53Wound-induced protein (Fragment) OS=Glycine max GN... [more]
WHW1_WHEAT6.927e-2669.23Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
WIN2_SOLTU1.182e-2566.23Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
HEVE_HEVBR3.438e-2563.64Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
PR4_PRUPE1.706e-2464.94Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]

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Properties
Property NameValue
Genbank descriptionC18013E08Rv Drought1 Citrus clementina cDNA clone C18013E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306064 ID=CX306064; Name=CX306064; organism=Citrus clementina; type=EST; length=435bp
TTTTTTTTTTTTTTTTTTTTTTTGAAGGGATAAAAAAAGGAAACTTTTAT
TACATAACTGTAGTGCCCATGAGCACTTCTTGATACTTCATCAGAAGTTT
TATTTTATTTATGAACTAAGTATATAGAGGGATAATTAATTAATAAATTA
ACCCTATTACAGCATTAAGCTTCGATCGATCATGGAATTATAGATGGTGC
TTTAATCATTGCAGTTCACAAACTCGTAGCTGACAGTAAGGAAGCCTTGT
TGATAGCCTATTCCATTGGTGTCCAATTTCTTGAACACTCCTTCGTCCAA
ATCTAAGCCTCCATTGGCACACTGATCAACAATTCTCACAATTTGTTGGG
CTCCTGTACCACTGTTTGTGACCCTTAAGCACCTGCCACAAGCAGCTTGT
CCAATGGGTCCGCCCGAATGACAGAAAGCAGTCCA
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