CX306161

Overview
NameCX306161
Unique NameCX306161
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10079 contig Ccv1_Contig10079:147..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306161 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 9.267e-38
Identity = 71/89 (79.78%), Postives = 82/89 (92.13%), Query Frame = -1
Query:  194 FSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAVAKTA 460
            FSKT+CPFCVSVK+L  +LG TFKA+ELD E DGS+IQ+ALAEWTGQ+TVPNVFIG KHIGGCD+TTALH EGKL+PLLTEAGA+AKT+
Sbjct:   18 FSKTYCPFCVSVKDLLSKLGATFKAVELDSEKDGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLPLLTEAGAIAKTS 106          
BLAST of CX306161 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.338e-36
Identity = 70/89 (78.65%), Postives = 81/89 (91.01%), Query Frame = -1
Query:  194 FSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAVAKTA 460
            +SK++CPFCV VK+LF+QLG TFKAIELD ESDGS++QSALAEWTGQ+TVPNVFI GKHIGGCD T AL+ EGKLVPLLTEAGA+A +A
Sbjct:   18 YSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGAIASSA 106          
BLAST of CX306161 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.894e-36
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = -1
Query:  206 FSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 460
            FSKTFCP+C SVK+L  QLG  FK IELD ESDGSD+Q+ALAEWTGQ+TVPNVFIGGKHIGGCD TT +H EGKL+PLLTEAGAV
Sbjct:   18 FSKTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLLTEAGAV 102          
BLAST of CX306161 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.133e-35
Identity = 71/90 (78.89%), Postives = 79/90 (87.78%), Query Frame = -1
Query:  194 FSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAVA-KTA 460
            FSKT+CP+CV VKEL QQLG  FKA+ELD ESDGS IQS LAEWTGQ+TVPNVFIGG HIGGCD+T+ LH +GKLVPLLTEAGA+A KTA
Sbjct:   18 FSKTYCPYCVRVKELLQQLGAKFKAVELDTESDGSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLLTEAGAIAGKTA 107          
BLAST of CX306161 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.343e-35
Identity = 66/85 (77.65%), Postives = 76/85 (89.41%), Query Frame = -1
Query:  206 FSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 460
            FSKT+CP+C SVK+L  QLG  +K +ELD ESDGS+IQ+ALAEWTGQ+TVPNVFIGGKHIGGCDSTTA H +G+LVPLLTEAGAV
Sbjct:   18 FSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLLTEAGAV 102          
BLAST of CX306161 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.433e-30
Identity = 60/86 (69.77%), Postives = 71/86 (82.56%), Query Frame = -1
Query:  203 FSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAVA 460
            FSKT+CPFC  VK L  +L  ++KA+ELD ESDGS++QSALA+WTGQ+TVP VFI GKHIGGCD T A+H  G LVPLLTEAGA+A
Sbjct:   44 FSKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLLTEAGAIA 129          
BLAST of CX306161 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.341e-28
Identity = 58/90 (64.44%), Postives = 70/90 (77.78%), Query Frame = -1
Query:  191 FSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAVAKTAA 460
            FSKT+C +C  VK+L  QLG TFK +ELD+ SDG +IQSAL+EWTGQ TVPNVFI G HIGGCD     + +GKLVPLLTEAGA+A  ++
Sbjct:   34 FSKTYCGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLLTEAGAIADNSS 123          
BLAST of CX306161 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.616e-24
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = -1
Query:  212 FSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAG 460
            FSKT CP+C+SVK+LF++L V    +ELD ESDGS++QSA  + +G +TVP VFI  K IGGCD+TT LH +GKL+PLL EAG
Sbjct:   16 FSKTTCPYCISVKDLFKKLKVVPFVVELDLESDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLLQEAG 98          
BLAST of CX306161 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.373e-17
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = -1
Query:  209 FSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGA 460
            FSK++CP    VKELF  LGV +  +ELD+  DG+ +Q  L E + QKTVPN+F+   H+GGCD T   H  G L  LL +  A
Sbjct:  125 FSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLLQKLLQDDSA 208          
BLAST of CX306161 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.048e-17
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = -1
Query:  215 FSKTFCPFCVSVKELFQQLGVTFKAIELDK-ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEA 460
            +SKT+C +   VK LF+ L V    +ELD+  S+GS +Q+ L + TGQ TVPNVFIGGKHIGGC  T  LH +G+L  +L EA
Sbjct:   90 YSKTWCSYSSQVKSLFKSLQVEPLVVELDQLGSEGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGELEAILAEA 172          
The following BLAST results are available for this feature:
BLAST of CX306161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
GLRX_SOLLC9.267e-3879.78Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GRXC6_ORYSJ1.338e-3678.65Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GLRX_VERFO3.894e-3680.00Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GRXC2_ARATH1.133e-3578.89Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GLRX_RICCO7.343e-3577.65Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC4_ORYSJ1.433e-3069.77Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GRXC1_ARATH1.341e-2864.44Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GLRX_DICDI7.616e-2461.45Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
TRXR3_MOUSE2.373e-1747.62Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
GRS12_ARATH4.048e-1753.01Monothiol glutaredoxin-S12, chloroplastic OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionC18014G03Rv Drought1 Citrus clementina cDNA clone C18014G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306161 ID=CX306161; Name=CX306161; organism=Citrus clementina; type=EST; length=460bp
TTTTTTTTTTTTTTTTTTTTTTTTGGGAAAATTCATACAGATTTCAACAT
AAAACAGAAACTGAACAAAAAAGTGCATTGGAAATTACTCAAATAAGCAT
AATTTCATGTTTAATTCAGACAGATTAAGCACTACCAACACATTCTTTAT
TTATTACTAGAATTAACAGGCAGACAATAGCCATCCATTAGGCAGCTGTC
TTGGCAACAGCTCCAGCTTCAGTGAGCAGAGGAACCAGCTTCCCTTCCCC
GTGCAGTGCAGTAGTTGAATCGCAGCCACCAATGTGTTTCCCTCCAATGA
AGACATTTGGAACAGTTTTCTGTCCAGTCCACTCAGCTAGAGCTGATTGA
ATGTCACTTCCATCACTTTCTTTGTCCAGTTCAATGGCCTTGAAAGTGAC
TCCGAGTTGCTGAAACAGCTCTTTGACACTCACGCAGAACGGACAAAACG
TTTTGCTGAA
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