CX306348

Overview
NameCX306348
Unique NameCX306348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length395
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10111 contig Ccv1_Contig10111:527..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX306348 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.484e-22
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = -1 
Query:   75 VRGKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSVGRFSFEDGVRRLVL 338
            +R + C+   +W++DNYD S+G+W++TT G+ G PG  TL +WFK+EK  + G YK   CPSVC+SC  LCS +GR S +DG  RL L
Sbjct:  111 IRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG-YKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLAL 197
[Close]
BLAST of CX306348 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.384e-17
Identity = 39/84 (46.43%), Postives = 57/84 (67.86%), Query Frame = -1 
Query:   57 LWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSVGRFSFEDGVRRLVLVRDDEP 308
            +W++D YD S+G++F+T GG+ G+PG ET+ +WFK+E+    G YK+V CP+VC SC   C  VG +  + G RRL L   D+P
Sbjct:  128 VWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLAL--SDKP 209
The following BLAST results are available for this feature:
BLAST of CX306348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC5.484e-2250.0021 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU2.384e-1746.43Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
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Properties
Property NameValue
Genbank descriptionC18017A10Rv Drought1 Citrus clementina cDNA clone C18017A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306348 ID=CX306348; Name=CX306348; organism=Citrus clementina; type=EST; length=395bp
ATTGATTACACAGACGTCGATCTTTCTCTAGCTGGAATTAACACAACAGG
AAAAGCCGGCTCATCATCACGAACCAGAACCAGACGTCGAACGCCATCCT
CAAACGAAAAGCGGCCAACGCTGCTGCAGAGTTTGACGCAAGACTCGCAA
ACAGATGGACAATGAACAATTTTGTATGCACCTGGTAGATTAGTTTTCTC
AAGCTTAAACCAATTTAGCAACGTTTCAGCTCCAGGGTGACCATCAAGTC
CCCCGGTTGTTATAAACCATCTGCCTGATGAAGCGTCATAGTTATCAACT
TTCCACAACGGTAGCTCGTTACATTGCTTCCCGCGTACTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTAAATTTTTTTTTTTTTTTTTTTTTTTTT
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