CX306350

Overview
NameCX306350
Unique NameCX306350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig882 contig Ccv1_Contig882:1..519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.962e-26
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = -2
Query:  333 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 515
            GYTEDDVVSTDFVGDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYSTRVVDLIVHMA  Q
Sbjct:  277 GYTEDDVVSTDFVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIVHMASVQ 337          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 8.463e-26
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTEDDVVSTDFVGD+RSSIFDAKAGIALS KFVKLVSWYDNEWGYS+RVVDLIVHM+K
Sbjct:  279 GYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.444e-25
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTEDDVVSTDFVGD+RSSIFDAKAGIALS  FVKLVSWYDNEWGYSTRVVDLI+HM+K
Sbjct:  279 GYTEDDVVSTDFVGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSTRVVDLIIHMSK 337          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.462e-25
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = -2
Query:  336 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 515
            GYTEDDVVSTDF+GD+RSSIFDAKAGIALS  FVKLVSWYDNEWGYS+RV+DLIVHMA T
Sbjct:  280 GYTEDDVVSTDFIGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSSRVIDLIVHMAST 339          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.486e-25
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = -2
Query:  333 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 515
            GYTEDDVVSTDF+GD+RSSIFDAKAGIAL+   VKLVSWYDNEWGYS+RVVDLIVHM+KTQ
Sbjct:  278 GYTEDDVVSTDFIGDNRSSIFDAKAGIALNDNCVKLVSWYDNEWGYSSRVVDLIVHMSKTQ 338          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.165e-25
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = -2
Query:  342 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 515
            G+TEDDVVSTDFVGDSRSSIFDAKAGIALSK FVKLVSWYDNEWGYS+RV+DLI HMA
Sbjct:  266 GFTEDDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLICHMA 323          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.165e-25
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = -2
Query:  333 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 515
            GYTED VVSTDF+GDSRSSIFDA+AGIALS  FVKLVSWYDNEWGYS+RVVDLIVHMA TQ
Sbjct:  280 GYTEDAVVSTDFIGDSRSSIFDAQAGIALSDNFVKLVSWYDNEWGYSSRVVDLIVHMAATQ 340          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.222e-24
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = -2
Query:  336 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 515
            GYTEDDVVSTDF+GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYS+RV+DLIVHM  T
Sbjct:  280 GYTEDDVVSTDFIGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVIDLIVHMDST 339          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.596e-24
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = -2
Query:  336 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 515
            GYTEDDVVSTDFVGD+RSSIFDAKAGIAL+  F+KLVSWYDNEWGYSTRVVDLI H+ KT
Sbjct:  277 GYTEDDVVSTDFVGDNRSSIFDAKAGIALNDNFIKLVSWYDNEWGYSTRVVDLIAHIHKT 336          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.723e-24
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = -2
Query:  333 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 515
            GY E+D+VSTDFVGDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYS RVVDLI HMAKTQ
Sbjct:  277 GYVEEDLVSTDFVGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMAKTQ 337          
The following BLAST results are available for this feature:
BLAST of CX306350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
G3PC_ANTMA4.962e-2691.80Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH8.463e-2693.22Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL1.444e-2591.53Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GINBI2.462e-2588.33Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_RANAC5.486e-2586.89Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TOBAC7.165e-2591.38Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY7.165e-2588.52Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA1.222e-2486.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA1.596e-2486.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PX_HORVU2.723e-2486.89Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18017A12Rv Drought1 Citrus clementina cDNA clone C18017A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306350 ID=CX306350; Name=CX306350; organism=Citrus clementina; type=EST; length=519bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAGCTGAAGAACAGGTCTTC
GATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATTG
TTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACT
ACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGAT
AATGTCTTGGAAGCAATTTTATTTAAACTCAGACCCTCTACATAGAAACA
CAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGTG
TGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGTG
GACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATACC
ATGAGACAAGCTTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCA
TCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACATC
ATCCTCAGTGTATCCCCCG
back to top