CX306382

Overview
NameCX306382
Unique NameCX306382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306382 vs. ExPASy Swiss-Prot
Match: Y273_METTH (UPF0098 protein MTH_273 OS=Methanobacterium thermoautotrophicum GN=MTH_273 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.607e-19
Identity = 54/121 (44.63%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   97 NHQGRLPRKYTNEGQGAKKNISPRLEWYNVPEGTKSLALVVEDIDAPDPSGPIVPWTHWVVVNIPPTLKGLPEGFSGKEEEIGGEYAGIKEGNNDWKVPGWRGPKLPNHGHRFQFKLYALD 459
            N +GR+P +YT +G+    NISP L W  VP   KSLAL+ +D DAP        WTHWV+ NIPP   GL E       + G    G  +G ND    G+RGP  P+  HR+ F+LYALD
Sbjct:    9 NDRGRIPSRYTCDGE----NISPPLSWDGVPGEAKSLALICDDPDAPSKV-----WTHWVIFNIPPDSTGLEENV----PDAGRLPDGSVQGYNDSGTLGYRGPCPPSGVHRYFFRLYALD 116          
BLAST of CX306382 vs. ExPASy Swiss-Prot
Match: Y1250_AQUAE (UPF0098 protein aq_1250 OS=Aquifex aeolicus GN=aq_1250 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.387e-15
Identity = 51/120 (42.50%), Postives = 70/120 (58.33%), Query Frame = 1
Query:  112 LPRKYTNEGQGAKKNISPRLEWYNVPEGTKSLALVVEDIDAPDPSGPIVPWTHWVVVNIPPTLKGLPEGFSGKEEEIGGEYAGIKEGNNDWKVPGWRGPKLP-NHG-HRFQFKLYALDDE 465
            +P+ YT +G    K+ISP + W +VPEGTKS  L+++     DP  PI  +THWVV +IP   + L E F         E +GIK+G ND+   G+ GP  P  HG HR+ FK++AL  E
Sbjct:   32 IPKVYTCDG----KDISPHIGWEDVPEGTKSFVLIMD-----DPDAPIGTFTHWVVYDIPSQTRELLEDFPKVP-----EVSGIKQGINDFGRVGYGGPCPPRGHGYHRYFFKVFALSVE 137          
BLAST of CX306382 vs. ExPASy Swiss-Prot
Match: YBCL_ECOLI (UPF0098 protein ybcL OS=Escherichia coli (strain K12) GN=ybcL PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.174e-14
Identity = 54/147 (36.73%), Postives = 75/147 (51.02%), Query Frame = 1
Query:   37 IAQASIAMASEEFRLVSPEINHQGRLPRKYTNEGQGAKK-NISPRLEWYNVPEGTKSLALVVEDIDAPDPSGPIVPWTHWVVVNIPPTLKGLPEGFSGKEEEIGGEY-AGIKEGNNDWKVPGWRG--PKLPNHGHRFQFKLYALDDE 465
            +A  + +  +  F++ S EI    +L   +   G G +  N SP L W  VPEGTKS A+ V D DAP  SG    W HW VVNIP T+  LP     ++   G +   G  +G ND+   G+ G  P   +  H +QFK++AL  E
Sbjct:   10 LAFITFSAQAAAFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSG----WWHWTVVNIPATVTYLPVDAGRRD---GTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTE 149          
BLAST of CX306382 vs. ExPASy Swiss-Prot
Match: YBHB_ECOLI (UPF0098 protein ybhB OS=Escherichia coli (strain K12) GN=ybhB PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.534e-14
Identity = 48/132 (36.36%), Postives = 68/132 (51.52%), Query Frame = 1
Query:   76 RLVSPEINHQGRLPRKYTNEGQGAK-KNISPRLEWYNVPEGTKSLALVVEDIDAPDPSGPIVPWTHWVVVNIPPTLKGLPEGFSGKEEEIGGEYAGIKEGNNDWKVPGWRGPKLP-NHGHRFQFKLYALDDE 465
            +L+S ++    +LP ++   G G    NISP L W +VP GTKS  +   D DAP  SG    W HWVVVN+P   + LP+GF      +     G+ +   D+   G+ G   P    HR+ F ++ALD E
Sbjct:    2 KLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSG----WWHWVVVNLPADTRVLPQGFG---SGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIE 126          
BLAST of CX306382 vs. ExPASy Swiss-Prot
Match: Y877_CHLPN (UPF0098 protein CPn_0877/CP_0992/CPj0877/CpB0906 OS=Chlamydia pneumoniae GN=CPn_0877 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.941e-14
Identity = 47/128 (36.72%), Postives = 66/128 (51.56%), Query Frame = 1
Query:   76 RLVSPEINHQGRLPRKYTNEGQGAKKNISPRLEWYNVPEGTKSLALVVEDIDAPDPSGPIVPWTHWVVVNIPPTLKGLPEGFSGKEEEIGGEYAGIKEGNNDWKVPGWRGPKLPNHGHRFQFKLYALD 459
            +L+SP   +   +P+KYT +G G    ISP L + +VP   +SLAL+VED D P        W HW+V N+  T+  L E         G E   ++  N   K P + GP  P+  HR+ F L+ALD
Sbjct:    2 QLLSPAFAYGAPIPKKYTCQGAG----ISPPLTFVDVPGAAQSLALIVEDPDVPKEIRSDGLWIHWIVYNLSTTITNLAE---------GAEIFAVQGLNTSGK-PVYEGPCPPDKQHRYFFTLFALD 115          
BLAST of CX306382 vs. ExPASy Swiss-Prot
Match: Y1153_PYRAB (UPF0098 protein PYRAB11530 OS=Pyrococcus abyssi GN=PYRAB11530 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.587e-11
Identity = 49/133 (36.84%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   67 EEFRLVSPEINHQGRLPRKYTNEGQGAKKNISPRLEWYNVPEGTKSLALVVEDIDAPDPSGPIVPWTHWVVVNIPPTLKGLPEGFSGKEEEIGGEYAGIKEGNNDWKVPGWRGPKLP-NHG-HRFQFKLYALD 459
            EE   VS    +   +P KYT EG     +++P L    + E  KSL ++V+D DAP     +  +THW+  NIPP ++ +PEG   K+ E+      I +G ND+   G+ GP  P  HG H + FK+Y LD
Sbjct:   31 EEMVKVSSVFGNDEFIPAKYTCEGI----DVNPPLRIEGISENAKSLVIIVDDPDAP-----LGTFTHWIAWNIPP-VEEIPEGIP-KQGEVEKPIHMI-QGRNDFGRIGYNGPCPPRGHGVHHYHFKVYVLD 151          
BLAST of CX306382 vs. ExPASy Swiss-Prot
Match: Y1269_PYRHO (UPF0098 protein PH1269 OS=Pyrococcus horikoshii GN=PH1269 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.073e-11
Identity = 54/154 (35.06%), Postives = 79/154 (51.30%), Query Frame = 1
Query:    7 IPDQAAHNKFIAQASIAMASEEFRL-VSPEINHQGRLPRKYTNEGQGAKKNISPRLEWYNVPEGTKSLALVVEDIDAPDPSGPIVPWTHWVVVNIPPTLKGLPEGFSGKEEEIGGEYAGIKEGNNDWKVPGWRGPKLP-NHG-HRFQFKLYALD 459
            IP   A    +    I    E+  L VS    +   +P KYT EG     +I+P L+   + +  KSL ++V+D DAP     +  +THW+  NIPP  + +PEG   K+ E+  +   I +G ND+   G+ GP  P  HG H + FK+YALD
Sbjct:   22 IPIVLATLVILGMGCIGGGEEKMSLKVSSVFGNNEFIPAKYTCEGV----DINPPLKIEGLSDNVKSLVIIVDDPDAP-----MGTFTHWIAWNIPPVTE-IPEGIP-KQGEV-DKPIHIIQGRNDFGRIGYNGPCPPRGHGVHHYHFKVYALD 163          
BLAST of CX306382 vs. ExPASy Swiss-Prot
Match: Y1698_ARCFU (UPF0098 protein AF_1698 OS=Archaeoglobus fulgidus GN=AF_1698 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.876e-11
Identity = 42/126 (33.33%), Postives = 69/126 (54.76%), Query Frame = 1
Query:   82 VSPEINHQGRLPRKYTNEGQGAKKNISPRLEWYNVPEGTKSLALVVEDIDAPDPSGPIVPWTHWVVVNIPPTLKGLPEGFSGKEEEIGGEYAGIKEGNNDWKVPGWRGPKLPNHGHRFQFKLYALD 459
            V     + G++P KYT +G+    +ISP L    + E  KSL ++ ED DAP     +  +THW+  N+ PT + +PE    K + +  +   + +G ND+   G+ GP  P+  HR+ F++YA+D
Sbjct:  141 VKSAFENGGKIPAKYTCDGE----DISPPLYIEGLREDVKSLVIICEDPDAP-----MGVFTHWIAWNVEPTSE-IPENVP-KTKFV--DEPKMVQGRNDFGKVGYNGPCPPSGEHRYYFRIYAID 253          
The following BLAST results are available for this feature:
BLAST of CX306382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
Y273_METTH4.607e-1944.63UPF0098 protein MTH_273 OS=Methanobacterium thermo... [more]
Y1250_AQUAE1.387e-1542.50UPF0098 protein aq_1250 OS=Aquifex aeolicus GN=aq_... [more]
YBCL_ECOLI1.174e-1436.73UPF0098 protein ybcL OS=Escherichia coli (strain K... [more]
YBHB_ECOLI1.534e-1436.36UPF0098 protein ybhB OS=Escherichia coli (strain K... [more]
Y877_CHLPN9.941e-1436.72UPF0098 protein CPn_0877/CP_0992/CPj0877/CpB0906 O... [more]
Y1153_PYRAB1.587e-1136.84UPF0098 protein PYRAB11530 OS=Pyrococcus abyssi GN... [more]
Y1269_PYRHO2.073e-1135.06UPF0098 protein PH1269 OS=Pyrococcus horikoshii GN... [more]
Y1698_ARCFU7.876e-1133.33UPF0098 protein AF_1698 OS=Archaeoglobus fulgidus ... [more]
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Properties
Property NameValue
Genbank descriptionC18017D10Rv Drought1 Citrus clementina cDNA clone C18017D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306382 ID=CX306382; Name=CX306382; organism=Citrus clementina; type=EST; length=470bp
GCGGGGATACCAGATCAAGCAGCTCATAATAAGTTTATAGCACAAGCAAG
CATAGCAATGGCCAGCGAGGAGTTCAGGCTAGTATCACCAGAAATAAACC
ACCAAGGGAGGCTGCCAAGAAAGTACACAAACGAGGGGCAAGGTGCGAAG
AAGAACATATCTCCCCGATTGGAATGGTACAATGTTCCGGAAGGAACGAA
GAGCTTGGCTCTGGTGGTTGAAGACATAGATGCCCCGGACCCAAGTGGCC
CAATCGTGCCGTGGACTCATTGGGTGGTTGTTAACATACCTCCGACGCTG
AAGGGTCTGCCGGAGGGATTCTCCGGCAAAGAGGAGGAAATTGGCGGAGA
ATACGCCGGGATCAAAGAGGGAAACAATGATTGGAAGGTTCCGGGGTGGC
GCGGGCCCAAGTTGCCCAACCATGGCCACAGGTTCCAGTTTAAGCTTTAT
GCCTTGGATGACGAGATGCA
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