CX306417

Overview
NameCX306417
Unique NameCX306417
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length505
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.627e-34
Identity = 68/85 (80.00%), Postives = 78/85 (91.76%), Query Frame = 1
Query:   79 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333
            MAS DVE+RCFVGGLAWAT D +L  AFS YG++L+SKI NDRETGRSRGFGFVTF+DEKSM+DAIEG+NGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.125e-34
Identity = 68/82 (82.93%), Postives = 75/82 (91.46%), Query Frame = 1
Query:   88 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333
            A+VE+RCFVGGLAWAT D SL +AFS +GDI +SKI NDRETGRSRGFGFVTF+DEKSMRDAIEG+NGQ LDGRNITVNEAQ
Sbjct:    2 AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.625e-34
Identity = 66/85 (77.65%), Postives = 78/85 (91.76%), Query Frame = 1
Query:   79 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333
            MAS DVE+RCFVGGLAWAT D +L  AF+ YGD+++SKI NDRETGRSRGFGFVTF+DEK+M+DAIEG+NGQ+LDGR+ITVNEAQ
Sbjct:    1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.799e-33
Identity = 66/85 (77.65%), Postives = 78/85 (91.76%), Query Frame = 1
Query:   79 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333
            MAS DVE+RCFVGGLAWAT + SL  AFS +G++++SKI NDRETGRSRGFGFVTF+DEKSM+DAIEG+NGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.899e-31
Identity = 62/85 (72.94%), Postives = 74/85 (87.06%), Query Frame = 1
Query:   79 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333
            MA+ADVE+RCFVGGLAWAT++ SL  AF++YG+IL+SK+  DRETGRSRGFGFVTF  E SM DAIE +NG+ LDGRNITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.862e-30
Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 1
Query:   88 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333
            ADVE+RCFVGGL WAT D SL  AFS YGD+++SKI  DRETGRSRGFGFVTF  +++MR AIE +NGQ+LDGRNITVNEAQ
Sbjct:    2 ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 7.074e-30
Identity = 59/82 (71.95%), Postives = 71/82 (86.59%), Query Frame = 1
Query:   88 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333
            ++VE+RCFVGGLAWAT D  L   FS +GD+++SKI NDRE+GRSRGFGFVTF+DEK+MRDAIE +NG+ LDGR ITVNEAQ
Sbjct:    2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.239e-30
Identity = 58/82 (70.73%), Postives = 72/82 (87.80%), Query Frame = 1
Query:   88 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333
            ++VE+RCFVGGLAWAT D+ L   FS +G++++SKI NDRETGRSRGFGFVTF+DEKSM+DAI+ +NG+ LDGR ITVNEAQ
Sbjct:    2 SEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.576e-29
Identity = 58/85 (68.24%), Postives = 73/85 (85.88%), Query Frame = 1
Query:   79 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333
            MA+ADVE+RCFVGGLAWAT + +L +AF+ +G +++SK+  DRETGRSRGFGFVTF  E+SM DAIE +NG+ LDGRNITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.839e-21
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 1
Query:  142 SSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333
            +SLH AFS YG++LESKI  DRET RSRGFGFVTF  E++MR AIEG+NG+ LDGRNITVNEAQ
Sbjct:    1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64          
The following BLAST results are available for this feature:
BLAST of CX306417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
GRP1_SINAL1.627e-3480.00Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP1_DAUCA2.125e-3482.93Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP7_ARATH3.625e-3477.65Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP2_SINAL1.799e-3377.65Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRPA_MAIZE4.899e-3172.94Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP_HORVU1.862e-3074.39Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP8_ARATH7.074e-3071.95Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP10_BRANA9.239e-3070.73Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP2_SORBI1.576e-2968.24Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP1_SORBI7.839e-2175.00Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC18017G12Rv Drought1 Citrus clementina cDNA clone C18017G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306417 ID=CX306417; Name=CX306417; organism=Citrus clementina; type=EST; length=505bp
GCGGGGATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTT
CTTAGTCCCCATTTTAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGT
TTCGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTC
CATGAGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTACTAA
CGATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCG
ATGAGAAGTCGATGAGGGACGCAATCGAAGGCGTGAACGGCCAGAATCTG
GACGGCCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGG
CGGTGGCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTG
GTGGACGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGA
TACGGAGGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAG
CCGTG
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