CX307975

Overview
NameCX307975
Unique NameCX307975
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307975 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 8.645e-68
Identity = 126/135 (93.33%), Postives = 132/135 (97.78%), Query Frame = 2
Query:   14 DISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRN 418
            D+SL DYIGV  +KHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLLTDQNPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYL+TTGARE+AFRN
Sbjct:   24 DVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRN 158          
BLAST of CX307975 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 1.475e-67
Identity = 126/135 (93.33%), Postives = 133/135 (98.52%), Query Frame = 2
Query:   14 DISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRN 418
            DISL DYIGVQAAKHAT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LITTGARE+AFRN
Sbjct:   34 DISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRN 168          
BLAST of CX307975 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 2.129e-66
Identity = 123/135 (91.11%), Postives = 132/135 (97.78%), Query Frame = 2
Query:   14 DISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRN 418
            DISL DYIGVQ +KHAT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGARE+AFRN
Sbjct:   34 DISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRN 168          
BLAST of CX307975 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 219.935 bits (559), Expect = 3.082e-57
Identity = 107/136 (78.68%), Postives = 124/136 (91.18%), Query Frame = 2
Query:   11 DDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRN 418
            +DISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGARE+AFRN
Sbjct:   31 NDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRN 165          
BLAST of CX307975 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 219.935 bits (559), Expect = 3.082e-57
Identity = 107/136 (78.68%), Postives = 124/136 (91.18%), Query Frame = 2
Query:   11 DDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRN 418
            +DISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGARE+AFRN
Sbjct:   31 NDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRN 165          
BLAST of CX307975 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 219.935 bits (559), Expect = 3.082e-57
Identity = 107/136 (78.68%), Postives = 124/136 (91.18%), Query Frame = 2
Query:   11 DDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRN 418
            +DISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGARE+AFRN
Sbjct:   31 NDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRN 165          
BLAST of CX307975 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 8.966e-57
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 2
Query:   74 HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRN 418
            HTAGRY  KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTD NPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV+QAIYL+TTGARESAFRN
Sbjct:    1 HTAGRYQAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVSQAIYLLTTGARESAFRN 115          
BLAST of CX307975 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 5.812e-56
Identity = 104/135 (77.04%), Postives = 121/135 (89.63%), Query Frame = 2
Query:   14 DISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRN 418
            DISL+DYI +++     Y+PH+AGRY+ KRFRKA CPI+ERLTNSLMMHGRNNGKKLMAVRIV HA EIIHL+TDQNPIQ+ VDA++N GPRED+TRIGSAG VRRQAVD+SPLRRVNQAI L+TTGARE++FRN
Sbjct:   43 DISLTDYIQIRSP---VYLPHSAGRYAAKRFRKANCPIIERLTNSLMMHGRNNGKKLMAVRIVAHAFEIIHLMTDQNPIQIAVDAIVNCGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAIALLTTGAREASFRN 174          
BLAST of CX307975 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 7.591e-56
Identity = 105/136 (77.21%), Postives = 122/136 (89.71%), Query Frame = 2
Query:   11 DDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRN 418
            +DISL DYI V+  K+A Y+PH+AGRY+   FRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGARE+AFRN
Sbjct:   31 NDISLQDYIAVKE-KYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRN 165          
BLAST of CX307975 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.767e-55
Identity = 102/135 (75.56%), Postives = 122/135 (90.37%), Query Frame = 2
Query:   14 DISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRN 418
            DISL+DYI V+   HA Y+PHTA RY+VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV+H+ EI+HLLT +NP+Q++ +A+ NSGPRED+TRIG AG VRRQAVD++PLRRVNQAI+L+ TGARE++FRN
Sbjct:   38 DISLTDYIAVKD-NHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRN 171          
The following BLAST results are available for this feature:
BLAST of CX307975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS5_CICAR8.645e-6893.3340S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS52_ARATH1.475e-6793.3340S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS51_ARATH2.129e-6691.1140S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS5_MOUSE3.082e-5778.6840S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5_HUMAN3.082e-5778.6840S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN3.082e-5778.6840S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5_NICPL8.966e-5795.6540S ribosomal protein S5 (Fragment) OS=Nicotiana p... [more]
RS5_NEUCR5.812e-5677.0440S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]
RS5_RAT7.591e-5677.2140S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5_PODCA3.767e-5575.5640S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC20004D07SK OF2 Citrus clementina cDNA clone C20004D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307975 ID=CX307975; Name=CX307975; organism=Citrus clementina; type=EST; length=418bp
TCGGCACGAGGATGACATCTCGTTGAGTGATTATATTGGCGTGCAAGCGG
CCAAGCACGCTACTTATGTGCCTCACACTGCTGGGAGGTACTCAGTTAAG
CGTTTCCGGAAGGCCCAATGTCCCATTGTTGAGAGGCTTACGAACTCTCT
TATGATGCACGGTCGTAACAACGGCAAGAAATTGATGGCCGTCAGGATTG
TTAAGCATGCCATGGAGATCATTCACCTTTTGACCGACCAGAACCCAATT
CAAGTCATTGTTGATGCTGTCATCAACAGTGGTCCAAGGGAAGATGCTAC
CCGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATATTTCCC
CATTGCGCCGTGTGAATCAAGCGATCTATCTAATCACCACTGGTGCTCGT
GAATCTGCTTTTCGTAAC
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