CX307988

Overview
NameCX307988
Unique NameCX307988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length364
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307988 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.028e-16
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 2
Query:   92 LCAVNVILATVRMAVTLAKIISGDMFEDLLPYKTDEPCHAGGFYTYDAFIEATQAFPAFGNSGNETMRKREIAAFFAQT 328
            LC V ++  T   A  +  I++ D+F ++L  + D+ C A GFYTYDAFI A  +FP FG +G++T RK+EIAAFF QT
Sbjct:    3 LCCVFLLFLTGSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQT 81          
BLAST of CX307988 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.708e-16
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 2
Query:   95 CAVNVILATVRMAVTLAKIISGDMFEDLLPYKTDEPCHAGGFYTYDAFIEATQAFPAFGNSGNETMRKREIAAFFAQT 328
            C V  +  T  +A  +  I++ D+F ++L  + D  C A GFYTYDAFI A  +FP FG SG++T R++EIAAFF QT
Sbjct:   12 CCVFFLFLTGSLAQGIGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQT 89          
BLAST of CX307988 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.315e-15
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 2
Query:   65 VQHRIVEP-ALCAVNVILATVRMAVTLAKIISGDMFEDLLPYKTDEPCHAGGFYTYDAFIEATQAFPAFGNSGNETMRKREIAAFFAQT 328
            ++  IV P AL  +  +  T  +A     I++ ++FE +L ++ ++ C A GFYTYDAFI A  +FP FG +G++T RK+EIAAFF QT
Sbjct:    1 MKFNIVSPVALSCLFFLFLTGTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQT 89          
BLAST of CX307988 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.315e-15
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 2
Query:   65 VQHRIVEP-ALCAVNVILATVRMAVTLAKIISGDMFEDLLPYKTDEPCHAGGFYTYDAFIEATQAFPAFGNSGNETMRKREIAAFFAQT 328
            ++  IV P AL  +  +  T  +A     I++ ++FE +L ++ ++ C A GFYTYDAFI A  +FP FG +G++T RK+EIAAFF QT
Sbjct:    1 MKFNIVSPVALSCLFFLFLTGTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQT 89          
BLAST of CX307988 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.717e-15
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 2
Query:   95 CAVNVILATVRMAVTLAKIISGDMFEDLLPYKTDEPCHAGGFYTYDAFIEATQAFPAFGNSGNETMRKREIAAFFAQT 328
            C V  +  T  +A  +  I++ D+F ++L  + D  C A GFYTYDAFI A  +FP FG +G++T R++EIAAFF QT
Sbjct:   12 CCVFFLFLTGSLAQGIGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQT 89          
BLAST of CX307988 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.996e-15
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 2
Query:  140 LAKIISGDMFEDLLPYKTDEPCHAGGFYTYDAFIEATQAFPAFGNSGNETMRKREIAAFFAQT 328
            L+ II   MF+D+L Y+ D  C A GFYTY+AFI A + FP FGN+G++ MRKREIAAF  QT
Sbjct:   85 LSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQT 147          
BLAST of CX307988 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.996e-15
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 2
Query:  140 LAKIISGDMFEDLLPYKTDEPCHAGGFYTYDAFIEATQAFPAFGNSGNETMRKREIAAFFAQT 328
            L  IIS  MF+ +L ++ D  C   GFY+Y+AFI A ++FP FG SG+ T RKREIAAFFAQT
Sbjct:   75 LGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQT 137          
BLAST of CX307988 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.996e-15
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 2
Query:  140 LAKIISGDMFEDLLPYKTDEPCHAGGFYTYDAFIEATQAFPAFGNSGNETMRKREIAAFFAQT 328
            L  IIS  MF+ +L ++ D  C   GFY+Y+AFI A ++FP FG SG+ T RKREIAAFFAQT
Sbjct:   80 LGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQT 142          
BLAST of CX307988 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.898e-14
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = 2
Query:   89 ALCAVNVILATVRMAVTLAKIISGDMFEDLLPYKTDEPCHAGGFYTYDAFIEATQAFPAFGNSGNETMRKREIAAFFAQT 328
            AL  V  +  T  +A  +  I++ D+F+ +L  + D  C A  FYTYDAFI A  +FP FG +G++T RK+EIAAFF QT
Sbjct:    9 ALSFVVFLFLTGTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQT 88          
BLAST of CX307988 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.479e-14
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 2
Query:   89 ALCAVNVILATVRMAV-----TLAKIISGDMFEDLLPYKTDEPCHAGGFYTYDAFIEATQAFPAFGNSGNETMRKREIAAFFAQT 328
            +L  V  ++ATV MA+     +++ IIS   F+ +L ++ D  C A GFYTYDAF+ A  AFP FG +G+   RKR++AAF AQT
Sbjct:    3 SLAVVVAVVATVAMAIGTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQT 87          
The following BLAST results are available for this feature:
BLAST of CX307988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CHIB_SOLLC2.028e-1648.10Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIP_TOBAC7.708e-1647.44Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIA_SOLLC1.315e-1543.82Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SOLCI1.315e-1543.82Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIQ_TOBAC1.717e-1546.15Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIB_POPTR4.996e-1558.73Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI2_TOBAC4.996e-1557.14Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC4.996e-1557.14Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIT_PETHY1.898e-1446.25Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIC_SECCE2.479e-1445.88Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]

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Properties
Property NameValue
Genbank descriptionC20004F02SK OF2 Citrus clementina cDNA clone C20004F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307988 ID=CX307988; Name=CX307988; organism=Citrus clementina; type=EST; length=364bp
TTCGGCACGAGGCTCATTGGGTCCTTACTAATTTTCGCTCGAGTTTTATC
TTTCGTACGGCGAGGTTCAGCACAGAATTGTGGAACCGGCCCTATGTGCG
GTGAACGTGATACTGGCCACGGTACGGATGGCGGTGACACTGGCCAAGAT
CATCTCAGGGGACATGTTTGAAGACTTGCTTCCGTATAAAACTGATGAAC
CATGCCATGCCGGAGGCTTCTACACTTATGATGCTTTTATAGAGGCAACC
CAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAG
AGAAATTGCTGCCTTTTTTGCCCAAACTGGCTCATGAAACTACTGGGGGA
TGGCCCGATGCACC
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