CX308341

Overview
NameCX308341
Unique NameCX308341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308341 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.704e-39
Identity = 103/198 (52.02%), Postives = 119/198 (60.10%), Query Frame = 1
Query:   58 MAQTMLLMS-GVSTSHAGNLKRDSLVTFQTQMLRPKPF-SHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALG 645
            MAQ MLLM  GVST++  +LKR++L+  Q Q ++PK   S+L F+PL +                                  + K KVED            K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP           GAIGALGDRG+FVDEP   TGL  AVIPPGK +RSALG
Sbjct:    1 MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVE--------KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP--TTGLEKAVIPPGKDVRSALG 188          

HSP 2 Score: 74.3294 bits (181), Expect = 5.956e-13
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  361 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 585
            K NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EP            AI      GKF+ + +E
Sbjct:  200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINP--GTGKFITDDEE 272          
BLAST of CX308341 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.528e-37
Identity = 96/196 (48.98%), Postives = 106/196 (54.08%), Query Frame = 1
Query:   58 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALG 645
            MAQTMLL +           ++SLV    + L+PKP S      L  +                   F             + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGAL DRGKF+D+P  PTGL  AVIPPGKG +SALG
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIPPGKGFKSALG 189          

HSP 2 Score: 70.4774 bits (171), Expect = 8.600e-12
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  361 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 585
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKFV + +E
Sbjct:  201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINP--GTGKFVTDEEE 273          
BLAST of CX308341 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.935e-36
Identity = 98/198 (49.49%), Postives = 106/198 (53.54%), Query Frame = 1
Query:   58 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALG 645
            MAQTMLL +           ++SLV    + L+PKP S L     PL                                    + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGALGDRGKFVD+P  PTGL  AVIPPGK  +SALG
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKAVIPPGKSFKSALG 191          

HSP 2 Score: 70.0922 bits (170), Expect = 1.123e-11
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  361 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 585
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKF+ + +E
Sbjct:  203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275          
BLAST of CX308341 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.442e-35
Identity = 95/198 (47.98%), Postives = 105/198 (53.03%), Query Frame = 1
Query:   58 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALG 645
            MAQTMLL +           ++SLV    + L+PKP S L     PL                                    + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGALGDRG+F+D+P   TGL  AVIPPGK  +SALG
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKAVIPPGKSFKSALG 191          

HSP 2 Score: 70.0922 bits (170), Expect = 1.123e-11
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  361 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 585
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKF+ + +E
Sbjct:  203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275          
BLAST of CX308341 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.120e-34
Identity = 79/113 (69.91%), Postives = 82/113 (72.57%), Query Frame = 1
Query:  307 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALG 645
            K KVED            K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP           GAIGALGDRGKFVD+P  PTGL  AVIPPGK +RSALG
Sbjct:   69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGKNVRSALG 179          

HSP 2 Score: 70.4774 bits (171), Expect = 8.600e-12
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  361 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 585
            K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EP            AI      GKF+ +  E
Sbjct:  191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINP--GNGKFITDDGE 263          
The following BLAST results are available for this feature:
BLAST of CX308341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBS_SPIOL3.704e-3952.02Photosystem II 22 kDa protein, chloroplastic OS=Sp... [more]
PSBS_TOBAC4.528e-3748.98Photosystem II 22 kDa protein, chloroplastic OS=Ni... [more]
PSBS_SOLLC2.935e-3649.49Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_SOLSG9.442e-3547.98Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_ARATH6.120e-3469.91Photosystem II 22 kDa protein, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC20008H07SK OF2 Citrus clementina cDNA clone C20008H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308341 ID=CX308341; Name=CX308341; organism=Citrus clementina; type=EST; length=646bp
GGCTTTGCTGGCTTCAGAAATCTAGCAGAGTGACAACATATTATTCATTC
AATATTAATGGCTCAAACTATGCTGCTCATGTCTGGGGTTTCCACTAGCC
ACGCAGGAAACTTGAAAAGAGACTCTTTAGTCACATTTCAAACGCAGATG
CTGAGACCTAAGCCATTCTCTCATCTTATGTTCAACCCACTCTCTAATGA
ATCTTTAACTGCTGCTGCGGCTTCTTCATCATCTAAAGCTTTTTCTACTG
TTGCCCTCTTCAAATCTAAAACCAAAGCTCCACCCAAGACCAAGAAGGTT
GAATCAAAGCCAAAAGTTGAGGATGGTATCTTTGGGACCTCTGGAGGATT
TGGTTTTACAAAGCAAAATGAGCTCTTTGTTGGTCGTGTTGCCATGATTG
GCTTTGCTGCTTCCTTGTTGGGTGAGGGAATAACTGGGAAGGGGATTCTA
GCTCAGTTGAATTTGGAGACCGGAATTCCAATCTATGAAGCAGAGCCACT
GCTTTTATTTTTCATCCTGTTCACCTTGCTTGGAGCAATTGGAGCTTTGG
GTGACCGTGGTAAGTTCGTTGATGAGCCAGATGAGCCCACTGGGCTCGGA
GGAGCTGTCATTCCTCCAGGCAAAGGCTTGAGATCAGCATTGGGTC
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