CX309058

Overview
NameCX309058
Unique NameCX309058
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length449
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309058 vs. ExPASy Swiss-Prot
Match: ZIP3_ARATH (Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.565e-25
Identity = 55/82 (67.07%), Postives = 67/82 (81.71%), Query Frame = -3
Query:   70 PVXXXXXXXISSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 315
            P+       I++ YDE+SPTALIV+G+ NAA+AGILIYMSLVDLLAADF +PKMQ+N  LQ  A+++LLLGAG MSLLAKWA
Sbjct:  258 PIGIVVGMGIANSYDESSPTALIVQGVLNAASAGILIYMSLVDLLAADFTHPKMQSNTGLQIMAHIALLLGAGLMSLLAKWA 339          

HSP 2 Score: 25.7942 bits (55), Expect = 5.565e-25
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = -1
Query:  306 KFKSRGVAILALFFSLTTQLG 368
            KFK   V I++ FF++TT +G
Sbjct:  240 KFKCLSVTIMSTFFAITTPIG 260          
BLAST of CX309058 vs. ExPASy Swiss-Prot
Match: ZIP5_ARATH (Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 6.466e-25
Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = -3
Query:   70 PVXXXXXXXISSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 315
            PV       ISS YD++SPTALIV+G+ NAA+AGILIYMSLVD LAADFM+PKMQ+N RLQ  A++SLL+GAG MSLLAKWA
Sbjct:  279 PVGIAVGMAISSSYDDSSPTALIVQGVLNAASAGILIYMSLVDFLAADFMHPKMQSNTRLQIMAHISLLVGAGVMSLLAKWA 360          
BLAST of CX309058 vs. ExPASy Swiss-Prot
Match: IRT1_ARATH (Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.862e-18
Identity = 42/72 (58.33%), Postives = 57/72 (79.17%), Query Frame = -3
Query:   70 SSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 285
            S+VY +NSP ALI  G+ NA +AG+LIYM+LVDLLAA+FM PK+Q + ++QF   ++ LLG G MS++AKWA
Sbjct:  268 STVYQDNSPKALITVGLLNACSAGLLIYMALVDLLAAEFMGPKLQGSIKMQFKCLIAALLGCGGMSIIAKWA 339          
BLAST of CX309058 vs. ExPASy Swiss-Prot
Match: ZIP12_ARATH (Probable zinc transporter 12 OS=Arabidopsis thaliana GN=ZIP12 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.729e-18
Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = -3
Query:   70 PVXXXXXXXISSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 315
            P+       ++ +Y+ENSP AL V G  NA A+GILIYM+LVDL+A  FMN K Q++ ++Q   +VSL++GAG MSLLA WA
Sbjct:  274 PIGIGIGIGVAEIYNENSPMALKVSGFLNATASGILIYMALVDLVAPLFMNQKTQSSMKIQVACSVSLVVGAGLMSLLAIWA 355          

HSP 2 Score: 23.8682 bits (50), Expect = 6.729e-18
Identity = 8/22 (36.36%), Postives = 16/22 (72.73%), Query Frame = -1
Query:  306 AKFKSRGVAILALFFSLTTQLG 371
            AKF+ + + ++ +FF+LT  +G
Sbjct:  255 AKFRVKKIWVMLMFFALTAPIG 276          
BLAST of CX309058 vs. ExPASy Swiss-Prot
Match: ZIP1_ARATH (Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.998e-18
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = -3
Query:   70 YDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 276
            Y + S  A++VEG+ NAA+AGILIYMSLVDLLA DFMNP++Q+N  L   A +SL+LGAG MSLLA WA
Sbjct:  287 YRKESKEAIMVEGMLNAASAGILIYMSLVDLLATDFMNPRLQSNLWLHLAAYLSLVLGAGSMSLLAIWA 355          
BLAST of CX309058 vs. ExPASy Swiss-Prot
Match: ZIP10_ARATH (Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.227e-17
Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = -3
Query:   70 SSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 285
            S  Y ENSP +LI  G+ NA++AG+LIYM+LVDLLAADFM  KMQ + +LQ  +  ++LLGAG MS++AKWA
Sbjct:  293 SKTYKENSPESLITVGLLNASSAGLLIYMALVDLLAADFMGQKMQRSIKLQLKSYAAVLLGAGGMSVMAKWA 364          
BLAST of CX309058 vs. ExPASy Swiss-Prot
Match: ZIP4_ARATH (Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.246e-17
Identity = 39/72 (54.17%), Postives = 54/72 (75.00%), Query Frame = -3
Query:   70 SSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 285
            +S ++ +SP AL+ EGI ++ +AGIL+YM+LVDL+AADF++ +M  N RLQ  + V L LGAG MS LA WA
Sbjct:  303 ASSFNSHSPGALVTEGILDSLSAGILVYMALVDLIAADFLSKRMSCNLRLQVVSYVMLFLGAGLMSALAIWA 374          

HSP 2 Score: 28.1054 bits (61), Expect = 3.246e-17
Identity = 11/22 (50.00%), Postives = 17/22 (77.27%), Query Frame = -1
Query:  306 AKFKSRGVAILALFFSLTTQLG 371
            A+F+++   I+A FF+LTT LG
Sbjct:  274 AQFRNKSATIMACFFALTTPLG 295          
BLAST of CX309058 vs. ExPASy Swiss-Prot
Match: ZIP8_ARATH (Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.105e-16
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = -3
Query:   70 SSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 285
            SSVY +NSPTALI  G+ NA +AG+LIYM+LVDLLAA+FM   +Q + +LQ     + LLG G MS+LAKWA
Sbjct:  276 SSVYKDNSPTALITVGLLNACSAGLLIYMALVDLLAAEFMGSMLQRSVKLQLNCFGAALLGCGGMSVLAKWA 347          
BLAST of CX309058 vs. ExPASy Swiss-Prot
Match: IRT3_ARATH (Fe(2+) transport protein 3, chloroplastic OS=Arabidopsis thaliana GN=IRT3 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.565e-16
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = -3
Query:   70 PVXXXXXXXISSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 315
            P+       ++S ++ +S  AL+ EGI ++ +AGIL+YM+LVDL+AADF++ KM+ N RLQ  + V L LGAG MS LA WA
Sbjct:  308 PIGIGIGTAVASSFNSHSVGALVTEGILDSLSAGILVYMALVDLIAADFLSTKMRCNFRLQIVSYVMLFLGAGLMSSLAIWA 389          

HSP 2 Score: 27.335 bits (59), Expect = 1.565e-16
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = -1
Query:  306 AKFKSRGVAILALFFSLTTQLG 371
            A+F+++   I+A FF+LTT +G
Sbjct:  289 AQFRNKSATIMACFFALTTPIG 310          
BLAST of CX309058 vs. ExPASy Swiss-Prot
Match: ZIP7_ARATH (Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.723e-15
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = -3
Query:   70 VYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 279
            +YDE SPTALIV G+ NA +AG+LIYM+LV+LLA +F  PK+Q N +L     V+   GA  MSL+AKWA
Sbjct:  296 IYDETSPTALIVVGVLNACSAGLLIYMALVNLLAHEFFGPKIQGNIKLHVLGYVATFTGAAGMSLMAKWA 365          
The following BLAST results are available for this feature:
BLAST of CX309058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ZIP3_ARATH5.565e-2567.07Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3... [more]
ZIP5_ARATH6.466e-2570.73Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5... [more]
IRT1_ARATH5.862e-1858.33Fe(2+) transport protein 1 OS=Arabidopsis thaliana... [more]
ZIP12_ARATH6.729e-1852.44Probable zinc transporter 12 OS=Arabidopsis thalia... [more]
ZIP1_ARATH9.998e-1865.22Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1... [more]
ZIP10_ARATH2.227e-1759.72Probable zinc transporter 10 OS=Arabidopsis thalia... [more]
ZIP4_ARATH3.246e-1754.17Zinc transporter 4, chloroplastic OS=Arabidopsis t... [more]
ZIP8_ARATH1.105e-1659.72Probable zinc transporter 8 OS=Arabidopsis thalian... [more]
IRT3_ARATH1.565e-1648.78Fe(2+) transport protein 3, chloroplastic OS=Arabi... [more]
ZIP7_ARATH2.723e-1557.14Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7... [more]

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Properties
Property NameValue
Genbank descriptionC21007H09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309058 ID=CX309058; Name=CX309058; organism=Citrus clementina; type=EST; length=449bp
AAAAACTGCCGCAAATTAATTAAACTATTGGATGAAGAAAAATTGTAGAC
AAAATCTGAATGAATTTTAAGCCCATTTGGCTAACAAAGACATGCAACCA
GCGCCTAAAAGAAGAGAAACATTTGCTCCAAACTGAAGCCTTTTATTGGT
TTGCATCTTTGGATTCATAAAATCTGCAGCAAGAAGATCCACCAAGGACA
TGTATATTAGGATTCCGGCTGCTGCTGCATTGAATATTCCTTCAACAATA
AGAGCGGTGGGACTATTTTCGTCATAAACACTTGATATTCCAATGCCTAT
TGCTATCCCAACTGGGTCGTCAAAGAGAAGAACAAGGCCAATATTGCAAC
TCCTCGAGACTTGAATTTTGCCTATAAAAACGAACACGTTAAAACAAAAT
TGTTAACATCAATTACTACTGAAATTTGGAGCCAGATTGTCCACTTGAT
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