CX309059

Overview
NameCX309059
Unique NameCX309059
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX309059 vs. ExPASy Swiss-Prot
Match: GUN2_PERAE (Endoglucanase 2 (Fragment) OS=Persea americana GN=CEL2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.806e-12
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = -3 
Query:  232 SRSPNPNVLTGAILGGPXXXXXXXXXXXNYQQSEPATYINAPFVGAVAFFSSKTTTN 402
            S SPNPN+L GAILGGP           NYQQSEPATYINAP VGA+AFF++    N
Sbjct:   74 SSSPNPNILVGAILGGPDSRDSFSDDRNNYQQSEPATYINAPLVGALAFFAANPVAN 130
[Close]
BLAST of CX309059 vs. ExPASy Swiss-Prot
Match: GUN1_PERAE (Endoglucanase 1 OS=Persea americana GN=CEL1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.963e-12
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = -3 
Query:  235 SRSPNPNVLTGAILGGPXXXXXXXXXXXNYQQSEPATYINAPFVGAVAFFSSKTTT 402
            S  PNPN+L GAILGGP           NYQQSEPATYINAP VGA+AFF++   T
Sbjct:  438 SSPPNPNILVGAILGGPDNRDSFSDDRNNYQQSEPATYINAPLVGALAFFAANPVT 493
The following BLAST results are available for this feature:
BLAST of CX309059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GUN2_PERAE1.806e-1261.40Endoglucanase 2 (Fragment) OS=Persea americana GN=... [more]
GUN1_PERAE8.963e-1260.71Endoglucanase 1 OS=Persea americana GN=CEL1 PE=2 S... [more]
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Properties
Property NameValue
Genbank descriptionC21007H10Rv AbsLeaSub1 Citrus clementina cDNA clone C21007H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309059 ID=CX309059; Name=CX309059; organism=Citrus clementina; type=EST; length=404bp
TTTTTTTTTTTTTTTTTTTTTTTGCTCAAAGTTGGCAAATATATCTTTTT
TGCCATAATTGATATATTACTTACCATATTACTCAAAAACTCAAGAGAAG
AATTATTAGAGGTTACAGTTCTGACGTGGAATTGGAAGCATTGTAAACCA
AACTTCTCAAATTCTCACATTACACAGGATAAGACAGATTCATGCCAATC
CTCAAGAAAGAAACAAAGAACATTTTAGTTAATTTGTGGTGGTTTTGGAT
GAGAAGAAAGCAACAGCACCAACAAACGGCGCATTGATGTATGTAGCTGG
TTCTGACTGCTGATAATTATTACGATCATCGGCAAAATTGTCTCTATTAT
CAGGCCCACCTAATATAGCTCCAGTGAGAACATTTGGATTGGGTGATCTA
GAGT
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