CX309306

Overview
NameCX309306
Unique NameCX309306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309306 vs. ExPASy Swiss-Prot
Match: PPT1_CAEEL (Palmitoyl-protein thioesterase 1 OS=Caenorhabditis elegans GN=ppt-1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.199e-12
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 3
Query:   30 ETSWFGYYPDGSFDPLLPAQQTQLYTEDWIGLKTLDEAGKVKFINVTGSHLEISRSDMKKYIV 218
            ++SWFG+Y DG  D +LP  +T LY ED IGLK L E+G++ F++V G HL+I RS +   I+
Sbjct:  231 DSSWFGFYKDGDIDTILPMNETDLYKEDRIGLKKLHESGRIHFMDVDGDHLQIPRSVLVNDII 293          
BLAST of CX309306 vs. ExPASy Swiss-Prot
Match: PPT1_RAT (Palmitoyl-protein thioesterase 1 OS=Rattus norvegicus GN=Ppt1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.457e-12
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 3
Query:   30 ETSWFGYYPDGSFDPLLPAQQTQLYTEDWIGLKTLDEAGKVKFINVTGSHLEISRSDMKKYIVPYLK 230
            ++ WFG+Y  G     +P Q+T LYTED +GLK +D+AGK+ F+   G HL+IS+     +I+P+LK
Sbjct:  240 DSEWFGFYRSGQAKETIPLQETTLYTEDRLGLKKMDKAGKLVFLAKEGDHLQISKEWFTAHIIPFLK 306          
BLAST of CX309306 vs. ExPASy Swiss-Prot
Match: PPT1_MOUSE (Palmitoyl-protein thioesterase 1 OS=Mus musculus GN=Ppt1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.588e-11
Identity = 29/67 (43.28%), Postives = 45/67 (67.16%), Query Frame = 3
Query:   30 ETSWFGYYPDGSFDPLLPAQQTQLYTEDWIGLKTLDEAGKVKFINVTGSHLEISRSDMKKYIVPYLK 230
            ++ WFG+Y  G     +P Q++ LYTED +GLK +D+AGK+ F+   G HL+IS+     +I+P+LK
Sbjct:  240 DSEWFGFYRSGQAKETIPLQESTLYTEDRLGLKKMDKAGKLVFLAKEGDHLQISKEWFTAHIIPFLK 306          
The following BLAST results are available for this feature:
BLAST of CX309306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PPT1_CAEEL3.199e-1249.21Palmitoyl-protein thioesterase 1 OS=Caenorhabditis... [more]
PPT1_RAT5.457e-1244.78Palmitoyl-protein thioesterase 1 OS=Rattus norvegi... [more]
PPT1_MOUSE1.588e-1143.28Palmitoyl-protein thioesterase 1 OS=Mus musculus G... [more]
back to top
Properties
Property NameValue
Genbank descriptionC20006F06SK OF2 Citrus clementina cDNA clone C20006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309306 ID=CX309306; Name=CX309306; organism=Citrus clementina; type=EST; length=590bp
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAACCTCGTGGTTTGGGTAT
TATCCAGATGGGTCGTTTGATCCTCTTTTACCTGCACAACAGACCCAATT
GTACACAGAAGACTGGATTGGTTTGAAAACCTTGGATGAAGCTGGAAAAG
TTAAATTCATTAATGTTACTGGAAGTCATCTTGAAATATCTCGAAGCGAC
ATGAAAAAGTACATAGTTCCGTACTTGAAGGACCAATCATTGACGGCAAT
GCAGCTGATGACAACAAAATCTTCATCTCATAAATGGGTTTCATCCATGT
GGAATTTCTTAATGAATATGGGCAGGTTCAGTGAGGATCAACCTTTGCTA
TCAGTTGTGTACTAAAAGTAAGCGTCCTCTTTCCCACGTGAATCAGTAGA
AAGCAAAAAGGGACAAATTAACAAACACTTGCAAGTTCATATGTTATTCT
TGACACATTCCCACTATTTTTTCTGTTTCTCGAGTTTTTATTGAAGGTAA
CATTTGGCCTGATGATTTTCTATTGATGTTGTTGATCGGGATAACTGATA
TTCTGATAAGTGAAATTTATGTCTAAACAATGGAGATTAT
back to top