DY256708

Overview
NameDY256708
Unique NameDY256708
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9529 contig Ccv1_Contig9529:4..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY256708 vs. ExPASy Swiss-Prot
Match: Y5566_ARATH (Uncharacterized protein At5g65660 OS=Arabidopsis thaliana GN=At5g65660 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.608e-47
Identity = 96/137 (70.07%), Postives = 106/137 (77.37%), Query Frame = 3 
Query:  138 MEN-QDFSPPHGDASRPSLGFPLGTALLLIVIFSLSGIFSCCYHWDKVRSLRRSFSEHADPEADNEGSPSKSKAAHMDLKKNQSQSLPVLMPGDQIPKFIALPCPCEPPRAEKIVVKVQKPPKLP-----RFPVPLY 530
            MEN QDFSPPH DASRPSLGFPLGTALLLI+IFSLSGIFSCCYHWDK RSLRRS + +  P AD E +P K K    ++KK Q+ S+PVLMPGD  PKFIALPCPC PPR EK+ V VQ PP+ P     RFPVPLY
Sbjct:    1 MENTQDFSPPHMDASRPSLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSLRRSLA-NGRPSADIESNPYKPKPPFPEMKKPQNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQSPPVKPARFPVPLY 136
The following BLAST results are available for this feature:
BLAST of DY256708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5566_ARATH2.608e-4770.07Uncharacterized protein At5g65660 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAA1CF04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256708 ID=DY256708; Name=DY256708; organism=Citrus clementina; type=EST; length=720bp
GGCACTTCATTAATTATTTTCTCCAGCTTTAGCCCTTCACTAAAACTCTC
TGTCTCCATATTCTGCTCTGTTCTTTCCCTTGTTACATATGATAGAAGGA
TCAAATTTTCCATCAAGCAATAGTGGGATTGTATGCAATGGAGAATCAGG
ATTTTTCACCACCCCACGGGGATGCATCTCGGCCGTCCCTTGGATTCCCT
CTTGGCACAGCACTCCTCTTGATTGTCATATTCAGCTTGAGTGGCATCTT
CTCCTGCTGCTACCACTGGGACAAGGTTAGATCACTCCGTCGGTCGTTCT
CCGAGCATGCGGATCCCGAGGCTGACAATGAAGGATCGCCCTCAAAATCC
AAGGCTGCCCACATGGATTTAAAGAAAAATCAGAGCCAAAGCTTGCCAGT
GTTAATGCCAGGCGACCAGATCCCAAAGTTTATAGCATTGCCATGTCCCT
GTGAGCCTCCTCGAGCCGAGAAGATTGTTGTAAAAGTGCAAAAACCGCCA
AAGCTGCCACGTTTTCCGGTGCCTTTGTATTAGCAGTTACAGAGGTTGTT
CACTTGGTGTATATAATCTCATATTTACAATTTAATTTAGTAAAAAGAAG
AGAAAGAAATTAGCTTTTACCATCATTTTTAACCTTCCCCAGGTAGAACT
TTTAGGTCATCAGTTTGTAAACCACAACATTTTCTTCATATGTAATAGTA
AAACTCAGCCAATTTGAAGA
back to top