DY256714

Overview
NameDY256714
Unique NameDY256714
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY256714_ssr528 microsatellite DY256714_ssr528:528..541. BLAST: Citrus ESTs to Prunus persica proteins V1
DY256714_ssr1 microsatellite DY256714_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig988 contig Ccv1_Contig988:1..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY256714 vs. ExPASy Swiss-Prot
Match: 5NG4_PINTA (Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.027e-13
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 3 
Query:   45 GRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKSKD 287
            G L    Y+G V SGIA+ VQ +   + GPVFV  + P+  I  + +  IIL E  +LG I GAILI+ GLY V+WGKS++
Sbjct:  263 GELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEE 343
The following BLAST results are available for this feature:
BLAST of DY256714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
5NG4_PINTA2.027e-1346.91Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1CH01ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256714 ID=DY256714; Name=DY256714; organism=Citrus clementina; type=EST; length=644bp
TTGGTTGGTTGGGTACCCGGGGGGAATTCGGCCATTANCGGCCGGGGAGG
CTCCTCGCTGCTGCTTACTCGGGAGTGGTCTGCTCAGGCATTGCATATTA
TGTGCAAGGTTTTGTCAGTAAACAAAAAGGGCCAGTTTTTGTCACATCTT
TTAGCCCTTTATGCATGATTATTACATCAGCTTTGGGAGTCATTATTTTG
GCTGAGCTAGTCCATCTTGGAAGCATACTTGGAGCAATTCTCATTGTGTT
TGGACTATACACTGTTGTGTGGGGCAAAAGCAAAGATCCTCCAAGCTCAG
CAGCATCATTCACTGATGAGAAAGCAGCTGCACAAGAGTTACCCATCACA
TGTAAATCAATTAATGTTGATGATAATAACATTGATGGGCCAGGTGGGAT
GCTGAAGACTAATCAAGCAAAGAGTACCTTAACTCAAGGAGCTTGAAAAT
GACATCGAAAATTTTTGAAGAAATTTAGCAGAAATTTCTCCAAAAGGGAT
CAATTATAATACTATTCAAAGCCTTTGCTCTCTCTCTCTCTCCACCCCCC
AACTGTGTCCTTTTTTTGGTTTCAAATTAGTGTATGCTGAAATTTTAATG
TGATCAAAAACCAAATTACAATAATATATTATATCTTTTTGGTG
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